Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01841 ATGCTTTCTCTGCGTTCATGTTTCTATCTACGCCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATTTTCTCCAACAATCCTTCCTTCTCTTTCAAACCCATATCTCAGAATTTGGTTTCACCAATGTCTTCTCGTCCTTCCGCCTTCGATGCTCTTATGTCTGGTGCTCGTGCCGCTGCCAAGAAGAAGCCTGCTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCATTAGATCCTCCTCTGAAACCTAGCTCTGTCCTTGCTCTTGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAATTCCAAATTTGGACGATCATGGAGGTACTCATTTGGATGTTGTCGATTTGGGAGAAACAAAGCTGGGTCAGGATAATGGTGGCGGTGTTGGAGCCAAGATTGGGCCGTTTGGGAACAAGACTTGTGCGTCTAGTGTTCAAGAAAGAACAGCGAAATTGAAGAGCTCTATTGCAGAATTGAAAAAGAAGGCTAAGGATTTCAACTCGAAGAATGTTGCTTGTTGGAAAGAGGGTGAACGTGTTCCTTTTTTGTTTCTTTGTTTGGGTTTCGATATGATTTCGGAGGAGTCCAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTGGGTCTTGTTGCTAAAGCAAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGACTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAATCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAGCACTCAACACCACCTCCGAATATTCAATCCCCTCTAGAAGAGGTTCTAACGTTATGTTTGCATCAGGCTTCTAAGATTGTAAAGCAGGTGTTTTCTATACTTCCAGTTTATGACAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAGCATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATACGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGGAAGTTCCCTGATGTTGTTCTAACAGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATCTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTACCTTTTCAGTTTCACCACAACCAGCTATCTCAAAATTTTCTTCCGAGGAGAACTATTTTAAAACTACTTATAATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGCGCGTCGAGAGATTTATTCCCTTCATTGCGTGTGTGCAGGCATGCATGCTGTCCAACTTCAATTGATGCTTCTCTACGATTCATTTATTGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTCGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCCACTTATGAGCCTTCCAAGAGGTCTCATAACTGGCTAAAACTGAAGAAGGATTACATTGACAGCATAGGGGATTCACTTGATTTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATCCCTCAACCAAAGTCGTATTATCGGTATGGAGATGCAATCAATCCAGATGTTTGGTTTGAGCCAACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTTATCGTGCAGGAGTCGGCATTGTGGACTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAATATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAGAACAATCAAGATGACAATGAAGACGACTAA 2550 42.35 MLSLRSCFYLRPITLPHPQFKKLIFSNNPSFSFKPISQNLVSPMSSRPSAFDALMSGARAAAKKKPANSSPKKRKALDSLDPPLKPSSVLALESTPPVESQCGSSIPNLDDHGGTHLDVVDLGETKLGQDNGGGVGAKIGPFGNKTCASSVQERTAKLKSSIAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEVLTLCLHQASKIVKQVFSILPVYDKLVPALLSGGVWNLSKACNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQFHHNQLSQNFLPRRTILKLLIILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNARREIYSLHCVCAGMHAVQLQLMLLYDSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPQPKSYYRYGDAINPDVWFEPTEVWEVKAADLTISPVYRAGVGIVDSDKGISLRFPRLVRVRKDKYPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26617784 26625400 - MELO3C026949.2.1 Cme11g01841 342504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01841 849 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 245 832 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cme11g01841 849 MobiDBLite consensus disorder prediction 61 117 - -
Cme11g01841 849 Gene3D - 162 436 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 Pfam DNA ligase N terminus 187 362 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 MobiDBLite consensus disorder prediction 817 849 - -
Cme11g01841 849 Gene3D - 684 848 IPR012340 -
Cme11g01841 849 ProSitePatterns ATP-dependent DNA ligase signature 2. 655 681 IPR016059 GO:0003909
Cme11g01841 849 MobiDBLite consensus disorder prediction 93 108 - -
Cme11g01841 849 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 396 682 - -
Cme11g01841 849 CDD Adenylation_DNA_ligase_I_Euk 426 684 - -
Cme11g01841 849 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 151 849 - -
Cme11g01841 849 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 169 427 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 Pfam ATP dependent DNA ligase domain 437 681 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cme11g01841 849 SUPERFAMILY Nucleic acid-binding proteins 689 835 IPR012340 -
Cme11g01841 849 CDD OBF_DNA_ligase_I 689 834 - -
Cme11g01841 849 Gene3D DNA ligase/mRNA capping enzyme 437 683 - -
Cme11g01841 849 Coils Coil 148 175 - -
Cme11g01841 849 PANTHER DNA LIGASE 1 151 849 - -
Cme11g01841 849 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 461 469 IPR016059 GO:0003909
Cme11g01841 849 Pfam ATP dependent DNA ligase C terminal region 706 817 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 ProSiteProfiles ATP-dependent DNA ligase family profile. 564 719 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01841 K10747 LIG1; DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] - csv:101213447 1470.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01283 Cme-Chr5:21085714 Cme11g01841 Cme-Chr11:26617784 1.32E-17 dispersed
Cme07g00981 Cme-Chr7:10729084 Cme11g01841 Cme-Chr11:26617784 5.07E-121 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G14700 66.2 6.8e-266 913.7
Cme08g00074 . 94 784 Core DNA Replication Machinery Family AT4G12620 68.1 8.9e-274 939.9
Cme03g02018 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.7 1.7e-141 499.2
Cme10g01189 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.0 5.7e-155 544.3
Cme11g02167 . 3 536 Core DNA Replication Machinery Family AT4G29910 59.1 4.1e-177 618.2
Cme05g00896 . 1 277 Core DNA Replication Machinery Family AT1G26840 63.2 1.7e-91 332.8
Cme01g01521 . 4 800 Core DNA Replication Machinery Family AT1G79150 58.0 3.0e-245 845.1
Cme04g01735 . 1 939 Core DNA Replication Machinery Family AT1G44900 73.8 0.0e+00 1311.6
Cme08g00150 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.7 3.0e-268 921.0
Cme01g01361 . 80 830 Core DNA Replication Machinery Family AT2G16440 77.5 0.0e+00 1146.7
Cme05g01856 . 1 742 Core DNA Replication Machinery Family AT2G07690 76.2 0.0e+00 1088.6
Cme08g00004 . 14 785 Core DNA Replication Machinery Family AT5G44635 69.1 0.0e+00 1094.7
Cme01g02199 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.1 0.0e+00 1217.6
Cme11g01369 . 12 458 Core DNA Replication Machinery Family AT2G29680 53.3 1.9e-136 483.0
Cme11g01369 . 22 427 Core DNA Replication Machinery Family AT1G07270 52.8 1.7e-120 429.9
Cme01g01799 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 2.5e-257 884.8
Cme04g02557 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.0 0.0e+00 1098.2
Cme01g00219 . 10 477 Core DNA Replication Machinery Family AT2G14050 76.8 2.9e-211 731.9
Cme01g02620 . 1 200 Core DNA Replication Machinery Family AT1G80190 66.3 4.0e-74 274.6
Cme07g01243 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.0 2.7e-59 224.9
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT1G19080 54.0 2.5e-46 182.2
Cme03g00250 . 118 312 Core DNA Replication Machinery Family AT3G55490 54.0 2.5e-46 182.2
Cme06g00165 . 1 188 Core DNA Replication Machinery Family AT5G49010 55.3 3.3e-46 181.8
Cme11g00335 . 9 1546 Core DNA Replication Machinery Family AT5G67100 60.7 0.0e+00 1761.5
Cme12g01926 . 3 622 Core DNA Replication Machinery Family AT1G67630 62.3 5.3e-218 754.2
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g00110 . 1 118 Core DNA Replication Machinery Family AT5G41880 75.4 1.9e-52 203.8
Cme08g01142 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cme04g02239 . 1 495 Core DNA Replication Machinery Family AT2G42120 55.3 4.4e-150 528.1
Cme11g02327 . 8 412 Core DNA Replication Machinery Family AT1G67320 64.3 9.1e-165 577.0
Cme09g01463 . 34 158 Core DNA Replication Machinery Family AT1G09815 60.8 6.3e-38 153.7
Cme11g01900 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2984.5
Cme09g00647 . 7 1305 Core DNA Replication Machinery Family AT1G08260 60.8 0.0e+00 1701.8
Cme11g01900 . 25 2206 Core DNA Replication Machinery Family AT2G27120 67.5 0.0e+00 2938.3
Cme09g00647 . 29 1305 Core DNA Replication Machinery Family AT2G27120 59.2 0.0e+00 1620.1
Cme12g02044 . 7 487 Core DNA Replication Machinery Family AT5G22110 68.9 1.4e-192 669.5
Cme05g00231 . 1 926 Core DNA Replication Machinery Family AT5G22010 64.0 2.1e-308 1055.0
Cme06g02668 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 1.6e-173 605.5
Cme08g01938 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.0e-178 622.9
Cme07g00817 . 1 290 Core DNA Replication Machinery Family AT1G21690 80.4 2.7e-128 455.3
Cme03g00527 . 39 254 Core DNA Replication Machinery Family AT1G77470 78.3 6.1e-89 324.7
Cme06g02413 . 32 705 Core DNA Replication Machinery Family AT2G06510 50.7 1.3e-197 686.4
Cme02g01827 . 1 634 Core DNA Replication Machinery Family AT5G08020 66.3 2.8e-240 828.2
Cme06g02413 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.8 7.2e-234 807.4
Cme02g01827 . 1 629 Core DNA Replication Machinery Family AT5G61000 64.3 9.1e-234 806.6
Cme06g02413 . 5 800 Core DNA Replication Machinery Family AT4G19130 53.9 9.9e-230 793.5
Cme04g02390 . 37 142 Core DNA Replication Machinery Family AT4G18590 65.1 1.6e-37 152.1
Cme02g00001 . 1 377 Core DNA Replication Machinery Family AT5G26680 85.0 7.7e-181 630.2
Cme07g01888 . 8 297 Core DNA Replication Machinery Family AT2G25100 68.3 3.7e-115 411.4
Cme11g01841 . 1 849 Core DNA Replication Machinery Family AT1G08130 62.9 1.0e-287 986.1
Cme11g01841 . 201 849 Core DNA Replication Machinery Family AT1G49250 64.2 9.5e-234 806.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009502 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01841 Cme_Chr11 FPKM 6.668394 11.859491 3.073612 3.502385 3.529781 3.8077 3.00182 2.47111 3.196336 3.069249