Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01841 ATGCTTTCTCTGCGTTCATGTTTCTATCTACGCCCCATCACATTGCCTCATCCCCAATTCAAGAAACTCATTTTCTCCAACAATCCTTCCTTCTCTTTCAAACCCATATCTCAGAATTTGGTTTCACCAATGTCTTCTCGTCCTTCCGCCTTCGATGCTCTTATGTCTGGTGCTCGTGCCGCTGCCAAGAAGAAGCCTGCTAATTCTTCTCCCAAGAAGCGTAAAGCCCTTGATTCATTAGATCCTCCTCTGAAACCTAGCTCTGTCCTTGCTCTTGAGTCAACGCCGCCTGTTGAATCGCAGTGCGGCAGTTCAATTCCAAATTTGGACGATCATGGAGGTACTCATTTGGATGTTGTCGATTTGGGAGAAACAAAGCTGGGTCAGGATAATGGTGGCGGTGTTGGAGCCAAGATTGGGCCGTTTGGGAACAAGACTTGTGCGTCTAGTGTTCAAGAAAGAACAGCGAAATTGAAGAGCTCTATTGCAGAATTGAAAAAGAAGGCTAAGGATTTCAACTCGAAGAATGTTGCTTGTTGGAAAGAGGGTGAACGTGTTCCTTTTTTGTTTCTTTGTTTGGGTTTCGATATGATTTCGGAGGAGTCCAGTAGGATTACTATCACCGATATAGTCTGCAACATGCTGAGGACCGTCATGGATACTACACCCGACGACTTGGTAGCCACTGTGTATCTTTTGGCGAATAAGATTGCTCCAGCTCATGAAGGGCTTGAGTTGGGGATTGGGGATGCTTCTATTATCAAAGCTCTTTCTGAGGCATTTGGGAGGACAGAGGCACAGGTCAAAAAACAGTACAAGGAATTGGGAGATTTGGGTCTTGTTGCTAAAGCAAGCCGTTCATCTCAATCTATGATGCGAAAGCCCGATGCTTTAACTATTGCCAAAGTATTTGACACATTTCGACTGATTGCTAAGGAATCTGGCAAGGATAGTCAGGAGAAGAAAAAGAATCATATCAAGTCACTGCTTGTTGCTGCCACTGACTGTGAACCTTTATATCTGATTAGATTGCTGCAGACAAAATTGCGAATTGGACTTGCTGAGCAGACTCTTTTAGCTGCATTAGGACAAGCAGCTGTATATGCTGAAAAGCACTCAACACCACCTCCGAATATTCAATCCCCTCTAGAAGAGGTTCTAACGTTATGTTTGCATCAGGCTTCTAAGATTGTAAAGCAGGTGTTTTCTATACTTCCAGTTTATGACAAACTTGTCCCTGCTCTTCTTAGTGGTGGTGTGTGGAATCTTTCAAAAGCATGCAACTTTACACCGGGAATTCCAATTGGACCCATGCTGGCAAAACCAACAAAAGGAGTGTCTGAGATCTTAAATAAATTCCAGGGTTTGGAATTTACTTGTGAATACAAATACGATGGGGAACGTGCCCAGATACATTACATGGAAGATGGTTCAGTTGAGATATACAGTCGAAATGCTGAACGGAACACTGGGAAGTTCCCTGATGTTGTTCTAACAGTATCAAGGATAAAGAAACCATCTGTAAGATCATTTATCTTGGATTGTGAACTTGTTGCTTATGATCGTGGAAAACAAAAGATTCTACCTTTTCAGTTTCACCACAACCAGCTATCTCAAAATTTTCTTCCGAGGAGAACTATTTTAAAACTACTTATAATTCTGAGTACTCGAGCTCGTAAGAATGTGGCCGTGAGTGATATTAAGGTTGAAGTGTGTGTATTTGCTTTTGATTTACTCTATCTTGATGGTCAACCACTTATCCAGAGAGAACTTAATGCGCGTCGAGAGATTTATTCCCTTCATTGCGTGTGTGCAGGCATGCATGCTGTCCAACTTCAATTGATGCTTCTCTACGATTCATTTATTGAAGAATCTGGATATTTTCAATTTGCCACAGCAATAATAACAAATGATCTCGAGGAAATACAAAAGTTCCTTGATGCATCGGTTGATCAAAGCTGTGAGGGTTTAATCATCAAAACACTGAACCGGGATGCCACTTATGAGCCTTCCAAGAGGTCTCATAACTGGCTAAAACTGAAGAAGGATTACATTGACAGCATAGGGGATTCACTTGATTTGGTACCAATTGCTGCTTTCCATGGCCGTGGGAAACGTACAGGTGTCTATGGTGCATTTCTCCTTGCCTGTTATGATAATGACAATGAAGAATTTCAAAGTATTTGTAAGATAGGAACTGGTTTTTCTGAAGCAATGCTTGAGGAACGTTCTGCTAGTCTCCGTTCTAAAGTCATCCCTCAACCAAAGTCGTATTATCGGTATGGAGATGCAATCAATCCAGATGTTTGGTTTGAGCCAACTGAGGTTTGGGAGGTTAAAGCAGCAGACTTGACTATTAGCCCAGTTTATCGTGCAGGAGTCGGCATTGTGGACTCTGACAAGGGAATTTCTCTCCGATTTCCACGTCTTGTTCGTGTGAGGAAAGACAAATATCCAGAGGAAGCCTCATCATCAGAGCAGGTTGCCGACATGTATAATGCTCAGAAACACAACCACCAGAACAATCAAGATGACAATGAAGACGACTAA 2550 42.35 MLSLRSCFYLRPITLPHPQFKKLIFSNNPSFSFKPISQNLVSPMSSRPSAFDALMSGARAAAKKKPANSSPKKRKALDSLDPPLKPSSVLALESTPPVESQCGSSIPNLDDHGGTHLDVVDLGETKLGQDNGGGVGAKIGPFGNKTCASSVQERTAKLKSSIAELKKKAKDFNSKNVACWKEGERVPFLFLCLGFDMISEESSRITITDIVCNMLRTVMDTTPDDLVATVYLLANKIAPAHEGLELGIGDASIIKALSEAFGRTEAQVKKQYKELGDLGLVAKASRSSQSMMRKPDALTIAKVFDTFRLIAKESGKDSQEKKKNHIKSLLVAATDCEPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYAEKHSTPPPNIQSPLEEVLTLCLHQASKIVKQVFSILPVYDKLVPALLSGGVWNLSKACNFTPGIPIGPMLAKPTKGVSEILNKFQGLEFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDVVLTVSRIKKPSVRSFILDCELVAYDRGKQKILPFQFHHNQLSQNFLPRRTILKLLIILSTRARKNVAVSDIKVEVCVFAFDLLYLDGQPLIQRELNARREIYSLHCVCAGMHAVQLQLMLLYDSFIEESGYFQFATAIITNDLEEIQKFLDASVDQSCEGLIIKTLNRDATYEPSKRSHNWLKLKKDYIDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDNDNEEFQSICKIGTGFSEAMLEERSASLRSKVIPQPKSYYRYGDAINPDVWFEPTEVWEVKAADLTISPVYRAGVGIVDSDKGISLRFPRLVRVRKDKYPEEASSSEQVADMYNAQKHNHQNNQDDNEDD 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26617784 26625400 - MELO3C026949.2.1 Cme11g01841 342504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01841 849 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 245 832 IPR000977 GO:0003910|GO:0005524|GO:0071897
Cme11g01841 849 MobiDBLite consensus disorder prediction 61 117 - -
Cme11g01841 849 Gene3D - 162 436 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 Pfam DNA ligase N terminus 187 362 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 MobiDBLite consensus disorder prediction 817 849 - -
Cme11g01841 849 Gene3D - 684 848 IPR012340 -
Cme11g01841 849 ProSitePatterns ATP-dependent DNA ligase signature 2. 655 681 IPR016059 GO:0003909
Cme11g01841 849 MobiDBLite consensus disorder prediction 93 108 - -
Cme11g01841 849 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 396 682 - -
Cme11g01841 849 CDD Adenylation_DNA_ligase_I_Euk 426 684 - -
Cme11g01841 849 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 151 849 - -
Cme11g01841 849 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 169 427 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 Pfam ATP dependent DNA ligase domain 437 681 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Cme11g01841 849 SUPERFAMILY Nucleic acid-binding proteins 689 835 IPR012340 -
Cme11g01841 849 CDD OBF_DNA_ligase_I 689 834 - -
Cme11g01841 849 Gene3D DNA ligase/mRNA capping enzyme 437 683 - -
Cme11g01841 849 Coils Coil 148 175 - -
Cme11g01841 849 PANTHER DNA LIGASE 1 151 849 - -
Cme11g01841 849 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 461 469 IPR016059 GO:0003909
Cme11g01841 849 Pfam ATP dependent DNA ligase C terminal region 706 817 IPR012309 GO:0003910|GO:0006281|GO:0006310
Cme11g01841 849 ProSiteProfiles ATP-dependent DNA ligase family profile. 564 719 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01283 Cme-Chr5:21085714 Cme11g01841 Cme-Chr11:26617784 1.32E-17 dispersed
Cme07g00981 Cme-Chr7:10729084 Cme11g01841 Cme-Chr11:26617784 5.07E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01841 K10747 - csv:101213447 1470.29