Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01844 ATGGAGCAATTTGGGAGGCATTTAATGACGGACATCAACGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTTGATCGATATGTGAATCTGATTCGTGGAGGGAACGAAACTCCGATATTCAATAATAACTTTGATCTCGATTTTGTGAACGGTTGCTTGATCGAGGATCGTGTGGTGGATCAAAGCTTGGAATACATTGTAGATTCGAATATGGTGATGAATTCTGATCCAAATTCTCTGTTTAGTACATTGGAGAGTTTCAATAGCATCATGAAAGAAGTTGAAAACGAAGACGAAGACGAAGACGAGGACGAAAACGAGTCTGTAGAGAACTCTTCTTCAACAACTTCAAAGAAACCTAAGGCAGATAGAACAAGAACTTTGATTTCTGAAAGAAGAAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACTAAGATGGACAAAGCTTCCATTGTTGGAGATGCAGTGTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCTTCAATCAATGAAACACAAAAAATTCATAGAGATCAAACCAAAAAGAAAATCATTCAAACTTCATATTCTGACCAATTCCTCCCCACCAAAATAATTCAGCTGGATGTGTTTCAAGTAGAGGAAAGAGGGTTTTATTTGAGGCTAGTTTGCAAGATGGGTGAAAGAGTGGCCATGTCTCTTTACAAAGTTCTTGAATCTCTCACCAACTTCATTATTCAAAGCTCCAATTTGGCTTCTGCTTCTGACAGATTCATTCTCACTGCTACAATTAATGTGAGGGATTGTGAGGTGGACATGAATTTGCCAAATCTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 930 38.17 MEQFGRHLMTDINDQFELQDFIHGDNFDRYVNLIRGGNETPIFNNNFDLDFVNGCLIEDRVVDQSLEYIVDSNMVMNSDPNSLFSTLESFNSIMKEVENEDEDEDEDENESVENSSSTTSKKPKADRTRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFLPTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFIIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26650243 26651948 + MELO3C026952.2.1 Cme11g01844 342507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01844 309 Coils Coil 171 198 - -
Cme11g01844 309 Pfam Helix-loop-helix DNA-binding domain 127 175 IPR011598 GO:0046983
Cme11g01844 309 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 192 IPR036638 GO:0046983
Cme11g01844 309 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 125 174 IPR011598 GO:0046983
Cme11g01844 309 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 79 308 - -
Cme11g01844 309 SMART finulus 131 180 IPR011598 GO:0046983
Cme11g01844 309 MobiDBLite consensus disorder prediction 120 134 - -
Cme11g01844 309 Gene3D - 115 191 IPR036638 GO:0046983
Cme11g01844 309 MobiDBLite consensus disorder prediction 97 112 - -
Cme11g01844 309 PANTHER TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR 79 308 - -
Cme11g01844 309 MobiDBLite consensus disorder prediction 97 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01844 Cme-Chr11:26650243 Cme04g01562 Cme-Chr4:22859940 7.26E-13 dispersed
Cme11g01844 Cme-Chr11:26650243 Cme02g01617 Cme-Chr2:23325650 4.49E-19 transposed
Cme11g01844 Cme-Chr11:26650243 Cme05g01277 Cme-Chr5:20931824 1.86E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42228 PF00010 HLH 2.00E-09 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01844 - - cmo:103503037 568.926