Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01844 | ATGGAGCAATTTGGGAGGCATTTAATGACGGACATCAACGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTTGATCGATATGTGAATCTGATTCGTGGAGGGAACGAAACTCCGATATTCAATAATAACTTTGATCTCGATTTTGTGAACGGTTGCTTGATCGAGGATCGTGTGGTGGATCAAAGCTTGGAATACATTGTAGATTCGAATATGGTGATGAATTCTGATCCAAATTCTCTGTTTAGTACATTGGAGAGTTTCAATAGCATCATGAAAGAAGTTGAAAACGAAGACGAAGACGAAGACGAGGACGAAAACGAGTCTGTAGAGAACTCTTCTTCAACAACTTCAAAGAAACCTAAGGCAGATAGAACAAGAACTTTGATTTCTGAAAGAAGAAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACTAAGATGGACAAAGCTTCCATTGTTGGAGATGCAGTGTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAAGCAGAGATATCAGTTTTGGAATCTTCAATCAATGAAACACAAAAAATTCATAGAGATCAAACCAAAAAGAAAATCATTCAAACTTCATATTCTGACCAATTCCTCCCCACCAAAATAATTCAGCTGGATGTGTTTCAAGTAGAGGAAAGAGGGTTTTATTTGAGGCTAGTTTGCAAGATGGGTGAAAGAGTGGCCATGTCTCTTTACAAAGTTCTTGAATCTCTCACCAACTTCATTATTCAAAGCTCCAATTTGGCTTCTGCTTCTGACAGATTCATTCTCACTGCTACAATTAATGTGAGGGATTGTGAGGTGGACATGAATTTGCCAAATCTGAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA | 930 | 38.17 | MEQFGRHLMTDINDQFELQDFIHGDNFDRYVNLIRGGNETPIFNNNFDLDFVNGCLIEDRVVDQSLEYIVDSNMVMNSDPNSLFSTLESFNSIMKEVENEDEDEDEDENESVENSSSTTSKKPKADRTRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKAEISVLESSINETQKIHRDQTKKKIIQTSYSDQFLPTKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTNFIIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF | 309 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 26650243 | 26651948 | + | MELO3C026952.2.1 | Cme11g01844 | 342507 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01844 | 309 | Coils | Coil | 171 | 198 | - | - | |
Cme11g01844 | 309 | Pfam | Helix-loop-helix DNA-binding domain | 127 | 175 | IPR011598 | GO:0046983 | |
Cme11g01844 | 309 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 123 | 192 | IPR036638 | GO:0046983 | |
Cme11g01844 | 309 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 125 | 174 | IPR011598 | GO:0046983 | |
Cme11g01844 | 309 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 79 | 308 | - | - | |
Cme11g01844 | 309 | SMART | finulus | 131 | 180 | IPR011598 | GO:0046983 | |
Cme11g01844 | 309 | MobiDBLite | consensus disorder prediction | 120 | 134 | - | - | |
Cme11g01844 | 309 | Gene3D | - | 115 | 191 | IPR036638 | GO:0046983 | |
Cme11g01844 | 309 | MobiDBLite | consensus disorder prediction | 97 | 112 | - | - | |
Cme11g01844 | 309 | PANTHER | TRANSCRIPTION FACTOR FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR | 79 | 308 | - | - | |
Cme11g01844 | 309 | MobiDBLite | consensus disorder prediction | 97 | 134 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g01844 | Cme-Chr11:26650243 | Cme04g01562 | Cme-Chr4:22859940 | 7.26E-13 | dispersed | |
Cme11g01844 | Cme-Chr11:26650243 | Cme02g01617 | Cme-Chr2:23325650 | 4.49E-19 | transposed | |
Cme11g01844 | Cme-Chr11:26650243 | Cme05g01277 | Cme-Chr5:20931824 | 1.86E-19 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42228 | PF00010 | HLH | 2.00E-09 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01844 | - | - | cmo:103503037 | 568.926 |