Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01897 ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAGTCAACAGAGGAATTTGATTCTGAGAAAGCTGGGACGAGTTACGGGCTAGATTTAGGAAAAAAGTTTTCTATAGAGGATGACATTAATCGTTTGTTTCAAGCAATTGATATCAGATCCTTACGGAGGTCAGGCCAGCAACGGGAAGTTGATAAAGATGCTTTACGAAAGAGTGCAATGAAAAGACCAGTTAGAGTAGGTCCGTCTCACATGGCAGGGATTGGAATTTCTGAGTCCGCGAGTTTAAAGCAGGCTTTGAGGGGCTTATGTATTTCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGCTTCACCCAGAATCTCTGAAGCTGGAACTATCAAAAGATTGTATCGGGCTGTGGTGGTTGAGGCCAATGGATTTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAAATTTCCATTGTTTCAGAAAGACTTATGTCAACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAAAGGAGGCTGATATACCAAACCAAGGAGCCGAATCTTCTTCTTTCAAGAATACTGGGGTATCAGAAGAGGCGAGTGTGGATAGATTGATGTCAAAGGATTTTGTAGTTAATACAGCTACTGAGGTGACAAGTGTAGAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCTTTACTCCTTCTGTTGAGAAGGATCTGGCTGCGAACAGCATGGCCATTTCCTCAAATGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAAAGGTACAGTAAGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGCTGTCAGGCCGAACAAAACAGCTTTCAGTAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCTCCTAGTATGTTTGATGTCTGCACAATAACGACCGACACTAATTTGGATACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGAAAATGCACAACTTCATGAGATTAAAGAAGAAGATATAGGTTCTTCTGTCTCATGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTGGTAAACACAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTTTAACAGGAATAGACCAACTATTATGGCATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGTAGTAGCCCAAGCATCAGTGGGGAAAGTATTCTCAGTGGATCGAGTCGTAGTGGAGTTAGGCCTCACATGTCAAGGGACTTGAAATGGGAAGCTATCCACAACCTTCAGGATCAACATAAATGCCTAGGTTCGAGAAACTTCAAGTTGCTTAGGAGACTTGGTCTTGGGGATATTGGGACTGTGTATCTCTCTGAGCTTTGTGATTCAAGCTGTCTTTTTGCTTTGAAAGTGATGGATAAGGAGTTCTTGGAAAGCAGAAAAAAAATTCTTCGAGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCATCCATTTCTCCCCACATTATATGCGTATTTTGAGACGGATAAGCACTCATGCTTGGTCATGGACTACTGTCCCGGTGGAGATCTCCATGTACTGCGTCAGAAGCAACCCTGCAAGAATTTCTCTGAGCGTGCAGTCAGGTTTTATGTTGCCGAAGTTCTTCTTGCACTGGAGTACTTACACATGCTAGGAGTTGTATACCGAGACTTGAAACCTGAAAACGTCCTGGTCCGAGAAGATGGGCACATAATGCTCACGGACTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAAACCTCTAAGAGGACATTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTTTCATGCTTCACTCCCAAAGTTCTATCTGCTCCATACAAATCCCGGAGAACAAAAGCAGATCATCAGGCTAGTCTATTACCACAGCTTATAGTTGAACCAACTGGTGCGCGGTCGAATTCATTTGTAGGAACCCATGAGTACCTCGCTCCTGAGATTGTCAAGGGCGAAAGCCACGGGAGTCCTGTTGATTGGTGGACATATGGGATTTTCCTGTTTGAGCTACTCTACGGTAGCACTCCCTTTAAAGGTTCAGCAAACGAGGACACATTAACGAACATAGTATCCCAAACTCTCAAGTTCCCTGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCAACAAAAGGAGCTGTCGAGATTAAGCAGCACCCATTTTTCGAAGGCCTCAATTGGGCTCTGATACGTTGTGCAACACCACCCGAGCTTCCCAAGTTTTTCGATGGTGCAACTAGTGCAATGCCAGTAGATTCTGGGGAGAATACAAAGCGTAGAGATCTCGAAAACATTGAAACCGATGCAGCAATGTTTGACCTGTTTTAG 2574 43.08 MTTLASTSEIVESTEEFDSEKAGTSYGLDLGKKFSIEDDINRLFQAIDIRSLRRSGQQREVDKDALRKSAMKRPVRVGPSHMAGIGISESASLKQALRGLCISQAAEMAASKRLTRSVASPRISEAGTIKRLYRAVVVEANGFGVPVNESKANLVEISIVSERLMSTFQNKMPELLHKKEADIPNQGAESSSFKNTGVSEEASVDRLMSKDFVVNTATEVTSVEPPGEVGKLKSPSFTPSVEKDLAANSMAISSNEDLTKNSVPEKEKGTVSCLSSLSSSGSAVRPNKTAFSNTRFIKPIFRTKNFVKKKAKLEPNSSPSMFDVCTITTDTNLDTIAEKSENQMPENAQLHEIKEEDIGSSVSCNITLGVEVSGNVVNTESSRPGTSLNCFNRNRPTIMASDERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSRDLKWEAIHNLQDQHKCLGSRNFKLLRRLGLGDIGTVYLSELCDSSCLFALKVMDKEFLESRKKILRAQTEREILQMLDHPFLPTLYAYFETDKHSCLVMDYCPGGDLHVLRQKQPCKNFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVETSKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKADHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGESHGSPVDWWTYGIFLFELLYGSTPFKGSANEDTLTNIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAVEIKQHPFFEGLNWALIRCATPPELPKFFDGATSAMPVDSGENTKRRDLENIETDAAMFDLF 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27108962 27113166 - MELO3C021439.2.1 Cme11g01897 342560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01897 857 CDD STKc_phototropin_like 472 827 - -
Cme11g01897 857 Gene3D Transferase(Phosphotransferase) domain 1 552 620 - -
Cme11g01897 857 MobiDBLite consensus disorder prediction 401 445 - -
Cme11g01897 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 593 605 IPR008271 GO:0004672|GO:0006468
Cme11g01897 857 SUPERFAMILY Protein kinase-like (PK-like) 451 824 IPR011009 -
Cme11g01897 857 Pfam Protein kinase domain 473 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01897 857 Pfam Protein kinase domain 701 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01897 857 Gene3D Transferase(Phosphotransferase) domain 1 699 822 - -
Cme11g01897 857 PANTHER FLIPPASE KINASE 1-RELATED 1 834 - -
Cme11g01897 857 Gene3D Phosphorylase Kinase; domain 1 471 551 - -
Cme11g01897 857 MobiDBLite consensus disorder prediction 412 444 - -
Cme11g01897 857 SMART serkin_6 472 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01897 857 ProSiteProfiles Protein kinase domain profile. 472 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01897 857 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 1 834 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01897 Cme-Chr11:27108962 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme11g01897 Cme-Chr11:27108962 Cme11g01898 Cme-Chr11:27120999 5.39E-138 tandem
Cme01g00585 Cme-Chr1:4536223 Cme11g01897 Cme-Chr11:27108962 1.11E-102 transposed
Cme01g01842 Cme-Chr1:26077450 Cme11g01897 Cme-Chr11:27108962 2.03E-71 transposed
Cme11g01748 Cme-Chr11:25620429 Cme11g01897 Cme-Chr11:27108962 5.70E-110 transposed
Cme12g01135 Cme-Chr12:19370549 Cme11g01897 Cme-Chr11:27108962 7.25E-128 transposed
Cme11g01897 Cme-Chr11:27108962 Cme08g01220 Cme-Chr8:8594012 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65269 PF00069 Pkinase 1.30E-36 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01897 - - csv:101206786 1580.07