Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01897 | ATGACTACATTAGCCAGTACTTCTGAAATTGTTGAGTCAACAGAGGAATTTGATTCTGAGAAAGCTGGGACGAGTTACGGGCTAGATTTAGGAAAAAAGTTTTCTATAGAGGATGACATTAATCGTTTGTTTCAAGCAATTGATATCAGATCCTTACGGAGGTCAGGCCAGCAACGGGAAGTTGATAAAGATGCTTTACGAAAGAGTGCAATGAAAAGACCAGTTAGAGTAGGTCCGTCTCACATGGCAGGGATTGGAATTTCTGAGTCCGCGAGTTTAAAGCAGGCTTTGAGGGGCTTATGTATTTCCCAGGCTGCAGAAATGGCTGCTTCAAAGAGGTTAACAAGGTCTGTAGCTTCACCCAGAATCTCTGAAGCTGGAACTATCAAAAGATTGTATCGGGCTGTGGTGGTTGAGGCCAATGGATTTGGTGTGCCTGTAAATGAAAGTAAAGCAAATTTGGTAGAAATTTCCATTGTTTCAGAAAGACTTATGTCAACTTTTCAAAATAAGATGCCTGAATTGTTGCATAAAAAGGAGGCTGATATACCAAACCAAGGAGCCGAATCTTCTTCTTTCAAGAATACTGGGGTATCAGAAGAGGCGAGTGTGGATAGATTGATGTCAAAGGATTTTGTAGTTAATACAGCTACTGAGGTGACAAGTGTAGAGCCACCTGGTGAGGTGGGAAAACTTAAATCTCCTTCCTTTACTCCTTCTGTTGAGAAGGATCTGGCTGCGAACAGCATGGCCATTTCCTCAAATGAAGATTTGACAAAAAATTCAGTGCCAGAGAAGGAGAAAGGTACAGTAAGTTGTTTATCTTCTCTATCAAGCTCTGGATCTGCTGTCAGGCCGAACAAAACAGCTTTCAGTAATACACGTTTCATCAAACCTATTTTCAGGACCAAGAATTTTGTCAAGAAGAAAGCAAAACTTGAACCAAATTCCTCTCCTAGTATGTTTGATGTCTGCACAATAACGACCGACACTAATTTGGATACCATAGCAGAAAAGTCTGAGAACCAGATGCCAGAAAATGCACAACTTCATGAGATTAAAGAAGAAGATATAGGTTCTTCTGTCTCATGTAACATAACTTTAGGTGTTGAAGTAAGTGGAAATGTGGTAAACACAGAATCTAGTAGACCTGGTACATCTCTCAACTGCTTTAACAGGAATAGACCAACTATTATGGCATCTGATGAGAGATCCAGATCAAGAGAGAAAGGGATGTTCTCTCAGAGCTCTAAAAGTAGTGTTGGTGAATGTAGTAGTAGCCCAAGCATCAGTGGGGAAAGTATTCTCAGTGGATCGAGTCGTAGTGGAGTTAGGCCTCACATGTCAAGGGACTTGAAATGGGAAGCTATCCACAACCTTCAGGATCAACATAAATGCCTAGGTTCGAGAAACTTCAAGTTGCTTAGGAGACTTGGTCTTGGGGATATTGGGACTGTGTATCTCTCTGAGCTTTGTGATTCAAGCTGTCTTTTTGCTTTGAAAGTGATGGATAAGGAGTTCTTGGAAAGCAGAAAAAAAATTCTTCGAGCACAAACTGAGAGAGAGATACTGCAAATGCTCGACCATCCATTTCTCCCCACATTATATGCGTATTTTGAGACGGATAAGCACTCATGCTTGGTCATGGACTACTGTCCCGGTGGAGATCTCCATGTACTGCGTCAGAAGCAACCCTGCAAGAATTTCTCTGAGCGTGCAGTCAGGTTTTATGTTGCCGAAGTTCTTCTTGCACTGGAGTACTTACACATGCTAGGAGTTGTATACCGAGACTTGAAACCTGAAAACGTCCTGGTCCGAGAAGATGGGCACATAATGCTCACGGACTTTGATTTGTCCCTTAGATGTGCTGTTAACCCAACGCTGCTTCAATCATCATCTCCAGTTGTGGAAACCTCTAAGAGGACATTGAATCCTTGTGATGAATCTAGTTGCATTGACCCTTTCTGCCTCCATCCATCCTGGCAGGTTTCATGCTTCACTCCCAAAGTTCTATCTGCTCCATACAAATCCCGGAGAACAAAAGCAGATCATCAGGCTAGTCTATTACCACAGCTTATAGTTGAACCAACTGGTGCGCGGTCGAATTCATTTGTAGGAACCCATGAGTACCTCGCTCCTGAGATTGTCAAGGGCGAAAGCCACGGGAGTCCTGTTGATTGGTGGACATATGGGATTTTCCTGTTTGAGCTACTCTACGGTAGCACTCCCTTTAAAGGTTCAGCAAACGAGGACACATTAACGAACATAGTATCCCAAACTCTCAAGTTCCCTGATTGCCCCATAGTTAGTTTTCATGCAAGAGACCTGATCAGATGCCTGCTGACAAAGGAGCCCGAAAACCGATTAGGCTCAACAAAAGGAGCTGTCGAGATTAAGCAGCACCCATTTTTCGAAGGCCTCAATTGGGCTCTGATACGTTGTGCAACACCACCCGAGCTTCCCAAGTTTTTCGATGGTGCAACTAGTGCAATGCCAGTAGATTCTGGGGAGAATACAAAGCGTAGAGATCTCGAAAACATTGAAACCGATGCAGCAATGTTTGACCTGTTTTAG | 2574 | 43.08 | MTTLASTSEIVESTEEFDSEKAGTSYGLDLGKKFSIEDDINRLFQAIDIRSLRRSGQQREVDKDALRKSAMKRPVRVGPSHMAGIGISESASLKQALRGLCISQAAEMAASKRLTRSVASPRISEAGTIKRLYRAVVVEANGFGVPVNESKANLVEISIVSERLMSTFQNKMPELLHKKEADIPNQGAESSSFKNTGVSEEASVDRLMSKDFVVNTATEVTSVEPPGEVGKLKSPSFTPSVEKDLAANSMAISSNEDLTKNSVPEKEKGTVSCLSSLSSSGSAVRPNKTAFSNTRFIKPIFRTKNFVKKKAKLEPNSSPSMFDVCTITTDTNLDTIAEKSENQMPENAQLHEIKEEDIGSSVSCNITLGVEVSGNVVNTESSRPGTSLNCFNRNRPTIMASDERSRSREKGMFSQSSKSSVGECSSSPSISGESILSGSSRSGVRPHMSRDLKWEAIHNLQDQHKCLGSRNFKLLRRLGLGDIGTVYLSELCDSSCLFALKVMDKEFLESRKKILRAQTEREILQMLDHPFLPTLYAYFETDKHSCLVMDYCPGGDLHVLRQKQPCKNFSERAVRFYVAEVLLALEYLHMLGVVYRDLKPENVLVREDGHIMLTDFDLSLRCAVNPTLLQSSSPVVETSKRTLNPCDESSCIDPFCLHPSWQVSCFTPKVLSAPYKSRRTKADHQASLLPQLIVEPTGARSNSFVGTHEYLAPEIVKGESHGSPVDWWTYGIFLFELLYGSTPFKGSANEDTLTNIVSQTLKFPDCPIVSFHARDLIRCLLTKEPENRLGSTKGAVEIKQHPFFEGLNWALIRCATPPELPKFFDGATSAMPVDSGENTKRRDLENIETDAAMFDLF | 857 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27108962 | 27113166 | - | MELO3C021439.2.1 | Cme11g01897 | 342560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01897 | 857 | CDD | STKc_phototropin_like | 472 | 827 | - | - | |
Cme11g01897 | 857 | Gene3D | Transferase(Phosphotransferase) domain 1 | 552 | 620 | - | - | |
Cme11g01897 | 857 | MobiDBLite | consensus disorder prediction | 401 | 445 | - | - | |
Cme11g01897 | 857 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 593 | 605 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g01897 | 857 | SUPERFAMILY | Protein kinase-like (PK-like) | 451 | 824 | IPR011009 | - | |
Cme11g01897 | 857 | Pfam | Protein kinase domain | 473 | 622 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01897 | 857 | Pfam | Protein kinase domain | 701 | 804 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01897 | 857 | Gene3D | Transferase(Phosphotransferase) domain 1 | 699 | 822 | - | - | |
Cme11g01897 | 857 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 834 | - | - | |
Cme11g01897 | 857 | Gene3D | Phosphorylase Kinase; domain 1 | 471 | 551 | - | - | |
Cme11g01897 | 857 | MobiDBLite | consensus disorder prediction | 412 | 444 | - | - | |
Cme11g01897 | 857 | SMART | serkin_6 | 472 | 804 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01897 | 857 | ProSiteProfiles | Protein kinase domain profile. | 472 | 804 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01897 | 857 | PANTHER | SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 | 1 | 834 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g01897 | Cme-Chr11:27108962 | Cme12g00788 | Cme-Chr12:14316880 | 0 | dispersed | |
Cme11g01897 | Cme-Chr11:27108962 | Cme11g01898 | Cme-Chr11:27120999 | 5.39E-138 | tandem | |
Cme01g00585 | Cme-Chr1:4536223 | Cme11g01897 | Cme-Chr11:27108962 | 1.11E-102 | transposed | |
Cme01g01842 | Cme-Chr1:26077450 | Cme11g01897 | Cme-Chr11:27108962 | 2.03E-71 | transposed | |
Cme11g01748 | Cme-Chr11:25620429 | Cme11g01897 | Cme-Chr11:27108962 | 5.70E-110 | transposed | |
Cme12g01135 | Cme-Chr12:19370549 | Cme11g01897 | Cme-Chr11:27108962 | 7.25E-128 | transposed | |
Cme11g01897 | Cme-Chr11:27108962 | Cme08g01220 | Cme-Chr8:8594012 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65269 | PF00069 | Pkinase | 1.30E-36 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01897 | - | - | csv:101206786 | 1580.07 |