Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01898 | ATGGAGTCTTCTCCAGACGACATCGCCGACGACCTGCAAAGCCTCAGCTTCAACTCTACTAACACCAACCGCAGCACCAGCTCCGGCTCTGAGACCACTCTCACCGCCTCCTCTTCCTCCCTTAACATCCCTTCCATTCTCAGTAAACCTCACGCGCCTTCCTCCGACCCTTGCTGGTCCGCTGTTAACCGGATCCGATCCGAATCTTCGTTTCGCCAACTCGCCTTCTCTGACCTTAAGTTCTTCCACCGCCTCGGCTCCGGTGACATTGGCTCCGTCTACCTCTCCGGTCTCAAGTCCGCTGGAACTGATGGATGCTTGTTTGCGGCGAAGGTAATGGATAAGAAGGAACTGGCGAGTCGGAGTAAAGAAGGAAGAGCGAGGACTGAGAGGGAGATTTTGGAGTCTTTGGACCATCCATTTCTACCGACGCTTTATGCTAGTATCGACTCACCGAAGTGGCTCTGTCTCTTGACGGAGTTTTGTCCCGGCGGCGACCTCCATGTTCTCCGACAACGGCAACCTAACAAACGATTCGATGAACTCGCCGTGAGATTCTATGCATCGGAGATAGTGGTTGCTATCGAATACCTTCACATGATGGGGATCGTTTACCGCGATCTGAAGCCGGAAAATGTACTGGTACGATCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCTTTGAAGTGCGAGGATTCAACGGCGACCCCACAGGTTATCAATGCTAAAAATCCGATGAATGGCACCGCCCCGTTAAAGGACTATCAAATTGATGCCCCTCCTTTCACATCATCCTCGTGCATACTTCCAAACTGTATAGTCCCCGCTGTGTCATGTTTCAACCCAAAACGCAAGCGAAAGAAGAAGTCTGGACATCGGAATGGACCCGAGTTTGTCGCTGAACCAGTTGACGTCCGGTCAATGTCATTTGTCGGTACCCACGAGTACTTGGCACCGGAGATTGTCTCAGGTGAGGGTCATGGAAGCGCAGTGGACTGGTGGACTTTAGGGGTGTTTGTGTTTGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTGACCTTGGCCAATATAGTTGCTAGAGCTCTTGAGTTCCCTAAGGAACCAGCAGTGCCAACAGCAGCTAAGGACCTCATCTCTCAGTTATTGATCAAAGACCCGTCGAGACGGCTGGGATCAACGACAGGGTCATCGGCGATCAAGCACCATTCATTTTTTCAAGGGGTAAATTGGGCATTATTGAGATGCACGTCGCCACCATTTACTCCTCCACCTTTTAGTAGAGAGAAAATTGCATCGGATGAAAGCTGCACAGAAGCTCCAGTGGAGTATTATTAG | 1356 | 50.66 | MESSPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSLNIPSILSKPHAPSSDPCWSAVNRIRSESSFRQLAFSDLKFFHRLGSGDIGSVYLSGLKSAGTDGCLFAAKVMDKKELASRSKEGRARTEREILESLDHPFLPTLYASIDSPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVINAKNPMNGTAPLKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVFELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPTAAKDLISQLLIKDPSRRLGSTTGSSAIKHHSFFQGVNWALLRCTSPPFTPPPFSREKIASDESCTEAPVEYY | 451 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27120999 | 27125428 | + | MELO3C021437.2.1 | Cme11g01898 | 342561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01898 | 451 | MobiDBLite | consensus disorder prediction | 9 | 36 | - | - | |
Cme11g01898 | 451 | Pfam | Protein kinase domain | 309 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01898 | 451 | Pfam | Protein kinase domain | 82 | 237 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01898 | 451 | SUPERFAMILY | Protein kinase-like (PK-like) | 57 | 435 | IPR011009 | - | |
Cme11g01898 | 451 | Gene3D | Transferase(Phosphotransferase) domain 1 | 166 | 241 | - | - | |
Cme11g01898 | 451 | Gene3D | Phosphorylase Kinase; domain 1 | 78 | 165 | - | - | |
Cme11g01898 | 451 | PANTHER | FLIPPASE KINASE 1-RELATED | 3 | 451 | - | - | |
Cme11g01898 | 451 | PANTHER | OS11G0150700 PROTEIN | 3 | 451 | - | - | |
Cme11g01898 | 451 | SMART | serkin_6 | 79 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01898 | 451 | ProSiteProfiles | Protein kinase domain profile. | 79 | 412 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g01898 | 451 | Gene3D | Transferase(Phosphotransferase) domain 1 | 308 | 430 | - | - | |
Cme11g01898 | 451 | MobiDBLite | consensus disorder prediction | 1 | 36 | - | - | |
Cme11g01898 | 451 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 203 | 215 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g01220 | Cme-Chr8:8594012 | Cme11g01898 | Cme-Chr11:27120999 | 8.13E-132 | dispersed | |
Cme11g01898 | Cme-Chr11:27120999 | Cme12g00788 | Cme-Chr12:14316880 | 6.52E-149 | dispersed | |
Cme11g01897 | Cme-Chr11:27108962 | Cme11g01898 | Cme-Chr11:27120999 | 5.39E-138 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65270 | PF00069 | Pkinase | 3.20E-34 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01898 | K08286 | - | csv:101207262 | 858.981 |