Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01914 TACAGAAGGAGAGAAGAAGATCATCAAAAACTCAGAAGAAGAAAAAGAAGAAGAAGAAGAAACCAATGGTTTGAAGAAGAAGGAATTTTTGGAATGGAGAGCCAAAGAGTTGAAGAAACTTGTTCTGTTTATGGAATCAACAACAACAATCTTTCTTCAACTTTGATTAATCATGATGGGCAATCTTTTGACTTTGGAGAATTGGAACAAGCAATTGTGCTACAAGGACTCGACGCGATGAATAAACTCGATCATTACGAACCTAAACAAAGCTTTTTGTCAGGGAAGCCTGCAGCAACACTGGAAATGTTCCCCTCTTGGCCAATCAAATACCAACAAACTTCAAGAGGAATTAGTTTGAGAAAAATAGAAGAGATGATGAGAGGATCAGGTAATTATAATAACAGTAATAATGAAGAAGAAGATCAAATGGAAATATTGGAAAAAGATCACGAAGGTGAAGAAGAAAGTGAAATGAGTAATCGTTCAACTCCTCGAGAACAACATGAACATAGCTATAACACCTCCTGCTTTAATATTATTAATAATATTCAACCTCATCAAGTTCTTATGGTCAGTACTGATGTTTCAACAACTGCACTTTCATCTCAACATCAGTACTCTCTTCAACAAAAGACATTGAGACGCTTAGCTCAAAACAGAGAGGCAGCGAGGAAGAGTCGACTAAGGAAGAAGGCTTACGTACAGCAACTTGAGAATAGTAGAATTAAGCTTACACAGCTCGAGCAACAATTTCAACAGGCACGATCTCAGGTTCTAAATATAAAAATTATAGGGAGTAGTGCAATGTGGTTTGATATGGAATATGTAAGGTGGTTGGAAGAGGAGCATCGACACACAATGGAGTTGCGTGGAGGATTAGAGGCACATGTATCAGACACAGAGTTGAAAGTGAGAGTTGATGCATGTATTTATCATTACGACCAAATCTTTCGATTGAAAGGAGAGGCTGCTAAGTTTGACATCTTCCATCTCATTACTGGGATGTGGATGTCTCCGGCTGAGCGTTGTTTCCTTTGGATTGGTGGATTTCGACCCTCAGATCTCATCAAGATGTTGATGTCACAATTGGATCCAATAACAGAACAACAAGTGATGGAGATTTATAAACTACAAAATTCCTCACAACAGGCAGAAGATGCTTTATCTCAAGGCCTCGATCAACTTCATCAATCTTTGACCGACACCGTCGCAGCCGGTCCGATCATCGATGGAGGAATCAACCACATGGTTTTGGCCATGGACAAGCTCTCTAGTCTCCATGGCTTTCTCCATCAGGCAGATATTTTGAGACAACAAACGCTTCATCAACTACATAGGATACTCACGATCAGACAAGCAGCCAAGTGTTTTTTAGTCATTGGTGAATATTACAGTAGATTACGAGCTCTAAGTTCCCTATGGTCCTCTCGTCTTAAAGAGTAA 1446 39.42 YRRREEDHQKLRRRKRRRRRNQWFEEEGIFGMESQRVEETCSVYGINNNNLSSTLINHDGQSFDFGELEQAIVLQGLDAMNKLDHYEPKQSFLSGKPAATLEMFPSWPIKYQQTSRGISLRKIEEMMRGSGNYNNSNNEEEDQMEILEKDHEGEEESEMSNRSTPREQHEHSYNTSCFNIINNIQPHQVLMVSTDVSTTALSSQHQYSLQQKTLRRLAQNREAARKSRLRKKAYVQQLENSRIKLTQLEQQFQQARSQVLNIKIIGSSAMWFDMEYVRWLEEEHRHTMELRGGLEAHVSDTELKVRVDACIYHYDQIFRLKGEAAKFDIFHLITGMWMSPAERCFLWIGGFRPSDLIKMLMSQLDPITEQQVMEIYKLQNSSQQAEDALSQGLDQLHQSLTDTVAAGPIIDGGINHMVLAMDKLSSLHGFLHQADILRQQTLHQLHRILTIRQAAKCFLVIGEYYSRLRALSSLWSSRLKE 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27252412 27257938 + MELO3C021427.2.1 Cme11g01914 342577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01914 481 MobiDBLite consensus disorder prediction 150 170 - -
Cme11g01914 481 Coils Coil 130 157 - -
Cme11g01914 481 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 210 254 IPR004827 GO:0003700|GO:0006355
Cme11g01914 481 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 215 230 IPR004827 GO:0003700|GO:0006355
Cme11g01914 481 PANTHER TRANSCRIPTION FACTOR TGA9 88 481 - -
Cme11g01914 481 Gene3D - 212 267 - -
Cme11g01914 481 Pfam bZIP transcription factor 212 249 IPR004827 GO:0003700|GO:0006355
Cme11g01914 481 PANTHER TRANSCRIPTION FACTOR TGA9 88 481 - -
Cme11g01914 481 Coils Coil 231 258 - -
Cme11g01914 481 MobiDBLite consensus disorder prediction 153 169 - -
Cme11g01914 481 Pfam Seed dormancy control 287 362 IPR025422 GO:0006351|GO:0043565
Cme11g01914 481 ProSiteProfiles DOG1 domain profile. 269 478 IPR025422 GO:0006351|GO:0043565
Cme11g01914 481 SUPERFAMILY Leucine zipper domain 212 256 IPR046347 GO:0003700|GO:0006355
Cme11g01914 481 SMART brlzneu 208 261 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01914 Cme-Chr11:27252412 Cme12g00629 Cme-Chr12:11347536 2.87E-157 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42233 PF14144 DOG1 1.10E-27 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01914 K14431 - csv:101223216 754.592