Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01922 ATGGCTGAAGAACATAGATGCCAAGCGCCGAAGCTTTGTGCGAACAACTGCGGATTTTTTGGCAGTCCCGCGACAAGAGATCTCTGTTCAAAATGTTACCGAGATCTGCAGTTAAAGGAACAGCAATCCTCCTCCGCTAAACTCGCCTTAAACCAAACCCTGGCGGCATCATCATCATCATCATCATCCTCGTTGTTGTTAAATCTGAAACCGGAAGCGAAGGAACAACGCGTGGAGGAGGAGGTGAGGACGGAAGTGGTTCGGACGGAAGCGGCGGAGGCAAGACAGCAACAGCAGCAGCAGCAGCCAAGCCGATGTATGACGTGCAGGCGGCGGGTGGGGTTGACGGGGTTCAAGTGCCGGTGTGGGATGGTGTATTGTGGGAGTCACCGGTACCCGGAACAACACGGGTGTGAATTTGACTTCAAGCAGATGGGGAAGGATCAGATCGCGAAGGCGAATCCGGTGGTGAAAGGGGAGAAACTGCAGAAGATTTGA 498 53.41 MAEEHRCQAPKLCANNCGFFGSPATRDLCSKCYRDLQLKEQQSSSAKLALNQTLAASSSSSSSSLLLNLKPEAKEQRVEEEVRTEVVRTEAAEARQQQQQQQPSRCMTCRRRVGLTGFKCRCGMVYCGSHRYPEQHGCEFDFKQMGKDQIAKANPVVKGEKLQKI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27311260 27312336 - MELO3C021416.2.1 Cme11g01922 342585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01922 165 Pfam A20-like zinc finger 12 34 IPR002653 GO:0003677|GO:0008270
Cme11g01922 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Cme11g01922 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Cme11g01922 165 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Cme11g01922 165 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 165 - -
Cme11g01922 165 Gene3D - 1 65 - -
Cme11g01922 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 54 - -
Cme11g01922 165 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Cme11g01922 165 Gene3D - 79 161 IPR035896 -
Cme11g01922 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 165 - -
Cme11g01922 165 Pfam AN1-like Zinc finger 106 142 IPR000058 GO:0008270
Cme11g01922 165 SUPERFAMILY AN1-like Zinc finger 86 160 IPR035896 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01206 Cme-Chr8:8505068 Cme11g01922 Cme-Chr11:27311260 4.82E-56 dispersed
Cme09g01680 Cme-Chr9:21512622 Cme11g01922 Cme-Chr11:27311260 4.54E-41 dispersed
Cme11g01922 Cme-Chr11:27311260 Cme01g02485 Cme-Chr1:32943566 8.61E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01922 - - csv:101219115 258.07