Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01927 ATGGCCAATTTCACTTCTTCTTCTTCTCCTTCTCCTTCTTCTGTCTCTCTGAATCCCAATGCTGTTTCAGCTTCTGCTGCTGCTGCTGCTTCTGATGATGATTTTGATGATGCTTGCTGTATTTGTCTCGACCCATTTACCTCCGATGATCCTGCCACTATTACCAGTTGCAAGCATGAATATCATCTCCAATGTATTCTTGATTGGTCTCAAAGAAGCGATGAGTGCCCAATCTGTTGCCAGTTGTTAGCGTTGAAGGACCCTGTTGGTCAGGAGCTTCTGGCAGCTATGGCTAGTGAAAGGCTTTTGAAGTCGAGAAGCTTGTCTTCTGCTGCATCTACTTCTTTGCGTTTCCACGAAAACTTTGATTTTGATCACGACTCTGTGCACTCGGATGACTCCGACTTTGATGACCTGATTATGCAGCATCTTGCTGCTGCAGCTAGCAGAGCTCGGTATGTTCATAGAAGGGAGAGGCAAAGACATTTTGGAGTTGGGCCTTCACAAGTTGCCTCTGCGTGTCCAGAGGTTCCAATGTCACCACGATTTCAAGATGCAACTCTAACTTCACCTAATAGTGATTCACCATCTCCTGGTTCTCCCATGCCATCGGTTGGCCAAACTGGAATTAATAAAATCTCCCCTAGTGTAATTTTACTGCCCGATACACCGTCAGGTAGTCAACAGAAAACAAACCAATCCGAGGGGCTCTCTTTCCAAGATTCCATCAAATCCAAATGGTCTGCCACTTCTGCAAAGTACAAGGAGTCAATCTTGCGAAGCACTCAAGGTATTAAGGAGAAACTGCTTGCCCGTAACAGCTCCGTCAAGGAGCTAAGCAAGGGAGTAAAGCGTGAAGTCAGTGCTGGGATTGCTGGCGTTGCTCGAATGATCGATCGCCTAGATTTGACTTCGAAAAGGAATACTGGTTCCGTTTCCTTCTTCAGCTGTGGGGGTACATCAAACTCCTTGAAAGGAAAGAACGTAGTGCAAGAGAGTGCTGGCACTGATGGTTCAGTTAAAATTAATAGAATATGTACTGGTTCACCTTCACAAGTTTCCCCAACCGTTCCAGGCTCCGTCGAAGTTTCTTTAGCTCAGAGAGGAGATTGA 1113 45.91 MANFTSSSSPSPSSVSLNPNAVSASAAAAASDDDFDDACCICLDPFTSDDPATITSCKHEYHLQCILDWSQRSDECPICCQLLALKDPVGQELLAAMASERLLKSRSLSSAASTSLRFHENFDFDHDSVHSDDSDFDDLIMQHLAAAASRARYVHRRERQRHFGVGPSQVASACPEVPMSPRFQDATLTSPNSDSPSPGSPMPSVGQTGINKISPSVILLPDTPSGSQQKTNQSEGLSFQDSIKSKWSATSAKYKESILRSTQGIKEKLLARNSSVKELSKGVKREVSAGIAGVARMIDRLDLTSKRNTGSVSFFSCGGTSNSLKGKNVVQESAGTDGSVKINRICTGSPSQVSPTVPGSVEVSLAQRGD 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27334695 27338062 + MELO3C021411.2.1 Cme11g01927 342590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01927 370 ProSiteProfiles Zinc finger RING-type profile. 39 79 IPR001841 -
Cme11g01927 370 SUPERFAMILY RING/U-box 36 86 - -
Cme11g01927 370 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 340 - -
Cme11g01927 370 MobiDBLite consensus disorder prediction 183 242 - -
Cme11g01927 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 84 IPR013083 -
Cme11g01927 370 SMART ring_2 39 79 IPR001841 -
Cme11g01927 370 Pfam Ring finger domain 38 79 IPR001841 -
Cme11g01927 370 MobiDBLite consensus disorder prediction 164 242 - -
Cme11g01927 370 MobiDBLite consensus disorder prediction 347 361 - -
Cme11g01927 370 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 340 - -
Cme11g01927 370 MobiDBLite consensus disorder prediction 347 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01927 K19043 RHF; E3 ubiquitin-protein ligase RHF [EC:2.3.2.27] - csv:101219674 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02299 Cme-Chr4:29945975 Cme11g01927 Cme-Chr11:27334695 2.92E-30 dispersed
Cme09g00197 Cme-Chr9:1532189 Cme11g01927 Cme-Chr11:27334695 4.51E-11 dispersed
Cme09g01778 Cme-Chr9:22224576 Cme11g01927 Cme-Chr11:27334695 9.29E-11 dispersed
Cme11g01927 Cme-Chr11:27334695 Cme04g02637 Cme-Chr4:32166057 6.82E-08 dispersed
Cme11g01927 Cme-Chr11:27334695 Cme06g00168 Cme-Chr6:1026283 3.27E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g449 . . . . . Bpe14g01314 . . . Cmo17g00251 . . . . . . . . . . . . . . Cla06g00552 Cam06g0595 Cec06g0593 Cco06g0600 Clacu06g0581 Cmu06g0576 Cre06g1342 Cone14ag0830 . Cone7ag0224 Cone4ag0215 . . . . . . . . . . Bma02g00689 . . . . . Cma17g00263 . Car17g00237 Cpe12g00219 . Bhi12g01814 . . . . . . . . . . . . . Lsi09g01347 . . Cme11g01927
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005314 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 3 1 1 1 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01927 Cme_Chr11 FPKM 7.100992 9.765174 2.089674 2.600898 12.937726 14.438997 12.482325 0.865228 0.906609 0.725888