Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01930 ATGTCTAAGACCCCTTCTGTGATTGATCTTGAAGCCATGCCGTTTAGTGAAGTGTGTAATAAACTGAAGCGTTTGAGATTGTTTGAGCCTTCTCTTGGGGTTTTGGGGTTCTTTTTTGTGTCTTTTTGTTTGATTTGTAGCTTTTTTTTCTTGGACTATAGAACGGCTTCGAAAGGGTTTGTGTTTCCTCTTCGATCAGAGAGTTTTGTTTGGCTTAGAAATGCTAATTTGGGTCAGAATCGGAAGTTTGAGTTTCTTTCTAAAGAGGGAAATGGGTGTGATTTGTTTGATGGAAATTGGGTTTGGGATGATTCTTATCCTTTATACGAGTCCAAGAGTTGTCCATTTGTAGACCAAGGCTTTCGCTGTTCTGAAAATGGTCGCCCTGATTTGTTCTACACCAAATGGAGATGGCAACCTAAACTTTGCAACTTGCCCAGGTTCAATGCAACGTTAATGTTGGAAAAAATGCGGAACAAACGGGTGGTGTTTGTTGGTGACTCAATTGGAAGAAACCAATGGGAATCTCTTTTGTGTATGCTATCATCTGCAGTTCCAAATAAAGAGTCCATCTATGAAGTGAATGGTAGTCCAATAACAAAGCACAAGGGATTTTTGGTGTTCAAGTTCAAGGACTTCAACTGCACCGTTGAATACTACAGAGCTCCATTTCTTGTCTTGCAGAGTCGACCTCCTTCTGGAACTTCTCAAGAGATCAAGACTACTCTTAAACTAGACCAAATGGATTGGTCCTCAGCCAAGTGGCGAGATGCTGATATTTTGGTCTTTAATACTGGGCATTGGTGGAACTATGAGAAGACCATTAGAGGAGGCTGTTACTTCCAAGAAGGGAAGGAGGTTAAGACGGAAATGAAGATTGAAGATGCATATCAGCAGTCACTCAAAACTGTGATGCACTGGATCAACAAAGAACTAAACTCGAAAAAAACAACCGTCTTCTTTCGAATGTTTGCCCCCGTGCATTTTCGAGGTGGAGATTGGAGGAATGGTGGTAGTTGTCATTTGGAAGCTCTGCCCGAGCTCGGTTCTTCACTTGTTCCTCCGGAAACCTGGTCACATTTTCGGATAGCTAATGCCATCCTATCAGGTTACCCGACGACTCCAAATTCAACTAGATTAGAGATATTGAACGTAACTCAAATGACTGCACAGAGAAAAGATGGGCACTCGTCTTTATACTACCTCAGTCCCGATGTCGGTCCTGCACCTCCTCATCGACAGGATTGTAGTCACTGGTGTTTGCCTGGGGTTCCTGATGTGTGGAATGAACTTCTTTATGCATTGTTCTTGAAGCATGAATGGAAGTCTTCAACTTCTCAGGCCACACCATTCTGA 1356 42.55 MSKTPSVIDLEAMPFSEVCNKLKRLRLFEPSLGVLGFFFVSFCLICSFFFLDYRTASKGFVFPLRSESFVWLRNANLGQNRKFEFLSKEGNGCDLFDGNWVWDDSYPLYESKSCPFVDQGFRCSENGRPDLFYTKWRWQPKLCNLPRFNATLMLEKMRNKRVVFVGDSIGRNQWESLLCMLSSAVPNKESIYEVNGSPITKHKGFLVFKFKDFNCTVEYYRAPFLVLQSRPPSGTSQEIKTTLKLDQMDWSSAKWRDADILVFNTGHWWNYEKTIRGGCYFQEGKEVKTEMKIEDAYQQSLKTVMHWINKELNSKKTTVFFRMFAPVHFRGGDWRNGGSCHLEALPELGSSLVPPETWSHFRIANAILSGYPTTPNSTRLEILNVTQMTAQRKDGHSSLYYLSPDVGPAPPHRQDCSHWCLPGVPDVWNELLYALFLKHEWKSSTSQATPF 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27345890 27348852 - MELO3C021408.2.1 Cme11g01930 342593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01930 451 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 28 442 IPR029962 GO:0016413
Cme11g01930 451 Pfam PMR5 N terminal Domain 92 144 IPR025846 -
Cme11g01930 451 PANTHER - 28 442 - -
Cme11g01930 451 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 145 434 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01930 - - - csv:101220391 921.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01930 Cme-Chr11:27345890 Cme12g00067 Cme-Chr12:643710 4.46E-85 dispersed
Cme01g00164 Cme-Chr1:1162144 Cme11g01930 Cme-Chr11:27345890 3.88E-47 transposed
Cme01g00699 Cme-Chr1:6446977 Cme11g01930 Cme-Chr11:27345890 2.50E-88 transposed
Cme01g02500 Cme-Chr1:33029832 Cme11g01930 Cme-Chr11:27345890 1.31E-49 transposed
Cme03g02233 Cme-Chr3:29129693 Cme11g01930 Cme-Chr11:27345890 2.09E-107 transposed
Cme04g02254 Cme-Chr4:29624343 Cme11g01930 Cme-Chr11:27345890 8.76E-100 transposed
Cme05g00415 Cme-Chr5:3587117 Cme11g01930 Cme-Chr11:27345890 1.81E-48 transposed
Cme05g01250 Cme-Chr5:20252757 Cme11g01930 Cme-Chr11:27345890 8.93E-109 transposed
Cme05g02080 Cme-Chr5:28979573 Cme11g01930 Cme-Chr11:27345890 1.41E-45 transposed
Cme07g02096 Cme-Chr7:25686859 Cme11g01930 Cme-Chr11:27345890 2.14E-99 transposed
Cme07g02222 Cme-Chr7:26389969 Cme11g01930 Cme-Chr11:27345890 1.24E-43 transposed
Cme10g01415 Cme-Chr10:17021147 Cme11g01930 Cme-Chr11:27345890 4.88E-74 transposed
Cme11g00064 Cme-Chr11:540874 Cme11g01930 Cme-Chr11:27345890 6.86E-101 transposed
Cme11g01930 Cme-Chr11:27345890 Cme08g01173 Cme-Chr8:8292574 9.45E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g444 . . . . . . . . Cmo08g01137 Cmo17g00252 . . . . . . . . . . . . . . Cla06g00550 Cam06g0593 Cec06g0590 Cco06g0598 Clacu06g0579 Cmu06g0574 Cre06g1340 Cone14ag0827 . . . . . . . . . . . . . . . . . . Cma08g01165 Cma17g00266 Car08g01042 Car17g00240 Cpe12g00221 Cpe17g00130 Bhi12g01811 . . . . . . . . . . . . . Lsi09g01350 . . Cme11g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004153 1 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 2 1 1 1 1 2 2 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01930 Cme_Chr11 FPKM 19.833334 22.168547 0.337065 0.33876 18.561646 16.711081 17.814795 0.087189 0.0 0.07785