Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01934 ATGGAAATGGATCGCGATTTGACTGTTCGATTATCTGCTCTGTGGAACGTCATTTGTCTAAAGAAAAGCTTTAAAGAGGACAGAATTCCTTGCCAAATTGAAGAGGGTTTGTTCTTAGGGTCCGTTGGAGCTGCCCATAACAAAGATCAACTGAAGAAATTGAATATCACGCACATTTTAACCATTGCTTGTTCATTGCCTCCTGCTGATCCAAACGATTTTGTTTGTAAAGTAGTATGTGTCTTGGACACTAGAGAGGCAGATATTAAACAGCACTTTGACGATTGTTTCAACTTTATCGATGAGGGAAGACGATCTGGTGGAGTCTTGGTTCATTGCTTTGCTGGAATATCCCGAAGTGTAACAATTACAGTTGCTTACCTGATGAAAAAGCTAGGCATGAACCTAACACAAGCATTGGAACACGTCAAGAGTAGACGACCACAAGCAGCTCCAAACATTGGTTTCATGGTTCAACTCAAGGACTTTGAAACAGCTCTTCAAGCTAGCAGAGTTGATGAAATGCAACTGTCAAATGTTTAA 543 40.52 MEMDRDLTVRLSALWNVICLKKSFKEDRIPCQIEEGLFLGSVGAAHNKDQLKKLNITHILTIACSLPPADPNDFVCKVVCVLDTREADIKQHFDDCFNFIDEGRRSGGVLVHCFAGISRSVTITVAYLMKKLGMNLTQALEHVKSRRPQAAPNIGFMVQLKDFETALQASRVDEMQLSNV 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27371643 27374270 + MELO3C021405.2.1 Cme11g01934 342597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01934 180 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 169 IPR029021 -
Cme11g01934 180 CDD DSP 30 162 - -
Cme11g01934 180 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 1B 15 169 - -
Cme11g01934 180 SMART dsp_5 29 166 IPR020422 GO:0006470|GO:0008138
Cme11g01934 180 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 15 169 - -
Cme11g01934 180 Pfam Dual specificity phosphatase, catalytic domain 37 165 IPR000340 GO:0008138|GO:0016311
Cme11g01934 180 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 91 148 IPR000387 GO:0016311|GO:0016791
Cme11g01934 180 Gene3D Protein tyrosine phosphatase superfamily 23 177 IPR029021 -
Cme11g01934 180 ProSiteProfiles Dual specificity protein phosphatase domain profile. 29 169 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00858 Cme-Chr10:5788233 Cme11g01934 Cme-Chr11:27371643 9.39E-20 dispersed
Cme10g01211 Cme-Chr10:12400395 Cme11g01934 Cme-Chr11:27371643 1.96E-06 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01934 - - csv:101211942 330.102