Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01943 ATGCAGCCCGACCAGAGAAGAAAGTCCTCCATAGACGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAGAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCCGCATATGACACTCATACTGGAGATAAAGTTGCAATTAAGAAAATCAATGATATCTTTGAGCACGTCTCTGATGCAACTCGTATTCTTCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATTGTGGAGATAAAGCACATCCTACTACCTCCATCTAGAAGGGAATTCAAAGACATTTATGTTGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCTGAACATTATCAGTTCTTTCTTTATCAGCTTCTTCGAGGCTTGAAATACATACACACAGCAAATGTCTTCCACCGGGACCTAAAACCAAAAAACATCTTAGCAAATGCCGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCACGAGTTGCTTTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCAATTGATATATGGAGCATTGGCTGCATCTTCGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTTGTCCACCAATTAGATTTGATGACAGACTTTTTGGGAACCCCAAATGCCGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGAAGATACTTGAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTCCCTCATGCAGATCCACTTGCACTTCGCTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAGGAAGATGTCAGGGAGCTTATTTACCGTGAAATTCTCGAGTATCATCCAAAAATGTTGAAGGAATACTTAGATGGATCAGAACCTACTGGTTTCATGTATCCAAGTGCGGTTGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCAACTGTAGCCCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATACTCAGATAACATGGTGCAGAACTCGGCCCAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGAATTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCTCTGTGTTACGATACAACTGTGGAGCAACAGCTGCGGCAGTGGCACCTGAAGTTCTTGAACAGCGGAGAATGACCAGAAACCCTTCCATTCCTCCACAGTATGCCGGTAATAACTGTTCGTATCCAAGGAGAAACTCATCCTGTAAAAATGAAAGAACTGATGAAGAAGCCATTGAAGGTCCAAATGGGTTGCAGCCTAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGGTACTGA 1701 42.62 MQPDQRRKSSIDVDFFTEYGEGSRYRIEEVIGKGSYGVVCSAYDTHTGDKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALRLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEYLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNMVQNSAQVANDLSKCSIKEVERPQVDRNCNIPLARVPIQVPQSIQAGNGARPGKVVGSVLRYNCGATAAAVAPEVLEQRRMTRNPSIPPQYAGNNCSYPRRNSSCKNERTDEEAIEGPNGLQPKPQYIARKVAAAQGGPGNNWY 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27494941 27501078 + MELO3C021394.2.1 Cme11g01943 342606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01943 566 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01943 566 MobiDBLite consensus disorder prediction 506 525 - -
Cme11g01943 566 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01943 566 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme11g01943 566 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Cme11g01943 566 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01943 566 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Cme11g01943 566 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cme11g01943 566 MobiDBLite consensus disorder prediction 506 547 - -
Cme11g01943 566 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cme11g01943 566 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 479 - -
Cme11g01943 566 CDD STKc_TDY_MAPK 24 361 - -
Cme11g01943 566 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01691 Cme-Chr2:24013113 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme05g00289 Cme-Chr5:2156882 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme07g01383 Cme-Chr7:19373528 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme10g01536 Cme-Chr10:19536359 Cme11g01943 Cme-Chr11:27494941 0 dispersed
Cme11g01943 Cme-Chr11:27494941 Cme12g01839 Cme-Chr12:24749678 0 dispersed
Cme12g00284 Cme-Chr12:3472518 Cme11g01943 Cme-Chr11:27494941 2.38E-115 dispersed
Cme11g01943 Cme-Chr11:27494941 Cme11g01564 Cme-Chr11:23160600 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65271 PF00069 Pkinase 7.10E-68 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01943 - K04371 csv:101216364 1126.69