Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01949 ATGCGAGGCCACGATTGGATCAATACGGTTCTTCCTGATGAGTTGATCGTTGAGATCTTCCGGTGCCTTGACTCGAAGCTTAGTCGCGATGCTTGTTCTCTTGTTTGCCGGCGTTGGCTCAAGCTCGAGCGCCTCAGCCGGACCACCCTACGAATCGGTGCAACTGGTAGTCCCGACCTCTTTGTTCAGCTCCTTGCTCGCCGGTTTGTCAATGTGAGAAATGTCCACATTGATGAGCGATTGGCCATTTCTTTTTCCCTTCATCCAAGACGAAGACGTCGCAAAGAAGCCACGCGCTTGCCATACCATGGAACTGATAATACTGGGGCTGAAGGTGTGTTGGATTCTTCTTGTCTGTCAGATGCTGGGCTAATTGCTCTCTCCGTAGGTTTTCCAAACCTCGAGAAACTAAGCTTAATTTGGTGCTCTAATATTTCAAGTCACGGTTTGACATCCCTAGCTGAGAAGTGTAGATTTTTGAAGTCACTGGAGCTACAGGGCTGCTATGTTGGGGACCAAGGTGTAGCTGCAGTTGGAGAATTCTGTAAACAACTTGAAGATGTAAATCTGCGTTTTTGTGAAGGGTTGACTGATGCCGGTTTGGTTGCATTAGCCCGTGGTTCTGGGAAATCATTAAAAGCATTCGGTATTGCAGCTTGTACCAAAATAACGGACATCTCATTAGAATCTGTGGGTGTGCACTGCAAAAATCTTGAGGTGTTGTCGCTGGATTCAGAAGTTATCCACAACAAAGGGGTGCTTTCTGTAGCTCAAGGCTGTCCACATCTGAAAGTTTTGAAGCTACAGTGTACAAATGTCACGGATGAAGCTCTGGTAGCTGTAGGCTCCTTATGTCCTTCTCTGGAGTTGTTGGCTTTATACAGCTTCCAGGAATTTACCGACAAGGGTTTACGTGCCATTGGAGTAGGCTGCAAGAAGTTAAAAAATCTCACTCTAAGCGATTGCTATTTCCTGAGCGATATGGGCTTGGAAGCTGTTGCAGCTGGTTGTAAAGGACTAACACATCTTGAAGTGAATGGCTGCCACAACATTGGGACCATGGGACTTGAATCCATCGCAAAATCTTGCCCCCAACTCACTGAATTGGCTTTGCTGTACTGCCAAAAGATTGTTAACTCTGGTCTCCTTGGAGTTGGTCAAAGTTGCAAGTTCTTACAAGCACTTCACTTGGTGGATTGCGCAAAAATTGGAGATGAAGCGATATGTGGCATAGCCAAGGGATGCAGAAATTTGAAGAAACTCCATATTCGTCGATGTTATGAGGTTGGGAATGCAGGAATCATTGCTATTGGCGAGAATTGCAAATTCCTCACGGACTTGAGCGTCAGATTTTGTGATAGGGTTGGCGATGAGGCACTTATTGCCATTGGTAAGGGTTGTTCCCTTCATCAGCTGAATGTCAGTGGGTGCCATCGTATCGGTGATGAGGGAATTGCAGCCATCGCTAGAGGTTGTCCCCAATTGAGTTACTTGGATGTAAGCGTTCTTGAGAACTTGGGTGATATGGCAATGGCTGAGTTAGGGGAAGGCTGCCCATTGCTCAAGGATGTGGTATTGTCCCACTGTCACCAAATAACTGATGCGGGTATAATGCATCTAGTGAAGTGGTGCACCATGATTGAATCCTGTCACATGGTCTACTGCCCGGGTATTTCTGCTGCTGGAGTCGCCACTGTCGTTTCTAGCTGCCCCAGCATAAAGAAAATTCTCGTTGAGAAATGGAAGGTGAGTGAGAGGACAAAGCGACGTGCGGGTTCAGTTATTTCATACCTTTGCGTGGACCTCTAG 1809 46.82 MRGHDWINTVLPDELIVEIFRCLDSKLSRDACSLVCRRWLKLERLSRTTLRIGATGSPDLFVQLLARRFVNVRNVHIDERLAISFSLHPRRRRRKEATRLPYHGTDNTGAEGVLDSSCLSDAGLIALSVGFPNLEKLSLIWCSNISSHGLTSLAEKCRFLKSLELQGCYVGDQGVAAVGEFCKQLEDVNLRFCEGLTDAGLVALARGSGKSLKAFGIAACTKITDISLESVGVHCKNLEVLSLDSEVIHNKGVLSVAQGCPHLKVLKLQCTNVTDEALVAVGSLCPSLELLALYSFQEFTDKGLRAIGVGCKKLKNLTLSDCYFLSDMGLEAVAAGCKGLTHLEVNGCHNIGTMGLESIAKSCPQLTELALLYCQKIVNSGLLGVGQSCKFLQALHLVDCAKIGDEAICGIAKGCRNLKKLHIRRCYEVGNAGIIAIGENCKFLTDLSVRFCDRVGDEALIAIGKGCSLHQLNVSGCHRIGDEGIAAIARGCPQLSYLDVSVLENLGDMAMAELGEGCPLLKDVVLSHCHQITDAGIMHLVKWCTMIESCHMVYCPGISAAGVATVVSSCPSIKKILVEKWKVSERTKRRAGSVISYLCVDL 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27546075 27551058 + MELO3C021388.2.1 Cme11g01949 342612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01949 602 Gene3D - 7 47 - -
Cme11g01949 602 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 12 493 - -
Cme11g01949 602 PANTHER F-BOX/LRR-REPEAT PROTEIN 4 473 577 - -
Cme11g01949 602 Gene3D Ribonuclease Inhibitor 114 350 IPR032675 -
Cme11g01949 602 Pfam Leucine Rich repeat 518 540 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 467 489 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 441 463 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 156 177 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 415 437 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 260 280 IPR001611 GO:0005515
Cme11g01949 602 Pfam Leucine Rich repeat 185 205 IPR001611 GO:0005515
Cme11g01949 602 SMART LRR_CC_2 441 466 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 182 207 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 518 543 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 492 517 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 415 440 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 544 569 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 131 156 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 157 181 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 311 336 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 260 284 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 389 414 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 235 259 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 467 491 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 209 234 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 337 362 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 285 310 IPR006553 -
Cme11g01949 602 SMART LRR_CC_2 363 388 IPR006553 -
Cme11g01949 602 Pfam F-box 11 48 IPR041567 -
Cme11g01949 602 PANTHER UNCHARACTERIZED 12 493 - -
Cme11g01949 602 PANTHER UNCHARACTERIZED 473 577 - -
Cme11g01949 602 SUPERFAMILY RNI-like 258 576 - -
Cme11g01949 602 Gene3D Ribonuclease Inhibitor 351 602 IPR032675 -
Cme11g01949 602 SUPERFAMILY F-box domain 9 42 IPR036047 GO:0005515
Cme11g01949 602 SUPERFAMILY RNI-like 116 329 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01949 K10268 FBXL2_20; F-box and leucine-rich repeat protein 2/20 - csv:101216664 1207.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00316 Cme-Chr1:2374086 Cme11g01949 Cme-Chr11:27546075 5.89E-07 dispersed
Cme02g00297 Cme-Chr2:2457283 Cme11g01949 Cme-Chr11:27546075 1.41E-11 dispersed
Cme04g01841 Cme-Chr4:26169100 Cme11g01949 Cme-Chr11:27546075 1.53E-16 dispersed
Cme05g01913 Cme-Chr5:27795795 Cme11g01949 Cme-Chr11:27546075 6.41E-38 dispersed
Cme07g00176 Cme-Chr7:1168552 Cme11g01949 Cme-Chr11:27546075 1.56E-08 dispersed
Cme07g00323 Cme-Chr7:2059124 Cme11g01949 Cme-Chr11:27546075 2.53E-06 dispersed
Cme07g01830 Cme-Chr7:23779734 Cme11g01949 Cme-Chr11:27546075 3.42E-08 dispersed
Cme07g01831 Cme-Chr7:23783321 Cme11g01949 Cme-Chr11:27546075 5.72E-14 dispersed
Cme08g00101 Cme-Chr8:760353 Cme11g01949 Cme-Chr11:27546075 5.94E-06 dispersed
Cme10g00782 Cme-Chr10:5064277 Cme11g01949 Cme-Chr11:27546075 2.69E-16 dispersed
Cme10g01037 Cme-Chr10:8597822 Cme11g01949 Cme-Chr11:27546075 3.94E-06 dispersed
Cme11g00702 Cme-Chr11:8298228 Cme11g01949 Cme-Chr11:27546075 1.02E-07 dispersed
Cme11g01708 Cme-Chr11:25163135 Cme11g01949 Cme-Chr11:27546075 9.03E-14 dispersed
Cme11g01949 Cme-Chr11:27546075 Cme03g01616 Cme-Chr3:25052467 1.44E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g405 . . Bda03g01248 . . Bpe14g01357 . . Cmo08g01154 Cmo17g00271 . . . . . . . . . . . . . . Cla06g00531 Cam06g0572 Cec06g0570 Cco06g0578 Clacu06g0560 Cmu06g0554 Cre06g1322 . Cone15ag0808 . . . . Chy11g01444 . . . . . . . . . Sed06g0516 . . Cma08g01183 . Car08g01059 Car17g00259 Cpe12g00236 Cpe17g00113 Bhi12g01780 Tan06g2588 Cmetu07g1857 Lac12g2348 . . . . . . . . . . . . . Cme11g01949
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010433 1 1 0 1 1 1 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01949 Cme_Chr11 FPKM 4.576283 4.091681 13.325244 12.990518 6.306741 6.114297 5.946963 17.137972 17.070402 18.228449