Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01950 ATGGCATTCATGGTTGCTCTTGCTATTGGTGACGTAATCACTGGTGATTTTGTTGAACCTGATGTCCTCGTCAGTGCATCTCCATCTGTGGGAGGTTTATTGGATTCATTAACAGGCAGCATAGGAATATCAGGAATCTCTGCTAGGGGAAAACCTGTAGCTTCTCCCAGCTCATCTGCCAATCCTTCTAGCAATACTATGGCAGGAGCTCTTAATTCAGACGCCCCTAGGCCTTTGGATAAAGATGCACTTAGATCTTTCATAAGCAGTTCAATGCCCTTTGGAACACCCTTGGATCTCAGCTATACCAATATATTTTCTATCAAAGTAAACGGTTTTTCCTCATCAGATCCTCCTCCTGCTGATGTTAAACAACCAGCATGGAAGCCATATCTGTATAAAGGGAAGCAGAGAGTGATACTTACAATTCACGAGATCATTAATGCAGCTATGTATGACAGGGATGAGATTCCAGATAAAATATCAGTTTCTGGTCAAATAAATTGTCGAGCTGAATTAGAAGGGTTGCCTGATGTTTCCTTCCCCTTAGCAGGGTCGAATAAGGCTCGCATTGAGGGCTTATCATTCCATCCTTGTGCCCAAGTTCCCGAACATGGCATAGATAAGCAAGCTGTGATGTTTTCTCCCCCACTTGGTAATTTTGTTTTAATGCGTTATCAGGCGGTATGTGCTGCTGGGCCTCCTGTTAAAGGATTTTATCAATTATCCATGGTCTCTGAGGATAAAGGTGCTTTTTTGTTCAAGTTGTGTTTGATGGAAGGTTATAAAGCTCCCCTGTGTATGGAATTCTGTACTGTGACTATGCCTTTTCCTAGAAGAAGGATTGTATCTTTCGATGGAACTCCTTCAATTGGAACAGTTTCTACTACCGAACATTCAGTTGAGTGGAAAATTTTAGCAAGTGGACGAGGACTCTTGGGAAAAAGTATCGAGGCAACTTTTCCTGGAACAATTAGGTTTGCACCCTGGCAAATCCAAAGATTGTATTCTTCAAGTTCTGTCACTCCTAATGTAGAAGAGGTAGATAGTGATGTCGAGGCTGAAAGTGCAAGCAATGTGGTCAACATTGAGGAGTTTTTAATGGAAAAAATGAGCAAGGATCTTCCTCCAGTCGAACTAGAGGAGCCATTTTGCTGGCAGGCTTACAATTATGCCAAGGTATCATTCAAGATTTTAGGGGCATCGTTATCAGGAATATCTGTTGATCCTAAATCTGTTAGCATTTATCCAGCTGTTAAAGCTCCAGTAGAATTTTCAACCCAGGTTACCTCCGGGGATTACATTTTGTGGAACACCTTGGATAAGTGCCCGTCTGTTGCCTCAGAAACAATATAG 1356 42.04 MAFMVALAIGDVITGDFVEPDVLVSASPSVGGLLDSLTGSIGISGISARGKPVASPSSSANPSSNTMAGALNSDAPRPLDKDALRSFISSSMPFGTPLDLSYTNIFSIKVNGFSSSDPPPADVKQPAWKPYLYKGKQRVILTIHEIINAAMYDRDEIPDKISVSGQINCRAELEGLPDVSFPLAGSNKARIEGLSFHPCAQVPEHGIDKQAVMFSPPLGNFVLMRYQAVCAAGPPVKGFYQLSMVSEDKGAFLFKLCLMEGYKAPLCMEFCTVTMPFPRRRIVSFDGTPSIGTVSTTEHSVEWKILASGRGLLGKSIEATFPGTIRFAPWQIQRLYSSSSVTPNVEEVDSDVEAESASNVVNIEEFLMEKMSKDLPPVELEEPFCWQAYNYAKVSFKILGASLSGISVDPKSVSIYPAVKAPVEFSTQVTSGDYILWNTLDKCPSVASETI 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27554132 27559562 + MELO3C021387.2.1 Cme11g01950 342613

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01950 451 CDD AP_MuD_MHD 126 444 - -
Cme11g01950 451 ProSiteProfiles Mu homology domain (MHD) profile. 136 399 IPR028565 -
Cme11g01950 451 MobiDBLite consensus disorder prediction 51 71 - -
Cme11g01950 451 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 126 437 IPR036168 -
Cme11g01950 451 PANTHER AP-5 COMPLEX SUBUNIT MU-1 1 449 IPR039591 -
Cme11g01950 451 MobiDBLite consensus disorder prediction 48 77 - -
Cme11g01950 451 Gene3D Mu homology domain, subdomain B 127 255 - -
Cme11g01950 451 Pfam Adaptor complexes medium subunit family 127 420 IPR028565 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01950 K19023 AP5M1, MUDENG; AP-5 complex subunit mu-1 - csv:101206253 837.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g404 . . Bda03g01246 . . . . . Cmo08g01155 Cmo17g00272 . . . . . . . . . . . . . . Cla06g00530 Cam06g0571 . Cco06g0577 Clacu06g0559 Cmu06g0553 Cre06g1321 . . Cone7ag0198 Cone4ag0192 . . Chy11g01445 . . . . . . . . . . . . Cma08g01184 Cma17g00284 Car08g01061 Car17g00260 . Cpe17g00112 Bhi12g01779 . . . . . . . . . . . . . Lsi09g01373 . . Cme11g01950
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007087 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01950 Cme_Chr11 FPKM 0.137765 0.0 0.177644 0.251814 0.432683 0.400035 0.706394 0.045862 0.108241 0.061425