Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01952 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCTCAAGACTTTCGACAAGGGGTTCCTTACTGTCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGATGATTCCTGTTGCTTCCCACAACTATCATTTGGAATATTTGGTTCTAGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAACGTTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGACATGGTCAATTTGGAATGCAGTGTTCAAACTTTGTGAAAGATAGACTAATAGAAAAGCTATGTAATGATCCTACATTGTTAGATGATCCTATACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGCGGAACGACTGCAATTACAGTTCTTGTTGTTGGGGATACTCTCTATGTAGCTAATGTTGGTGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGAATTGTGTTCTAGCTAAGGACTTGTCAAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTTTGAGTGTTGATCAAGTGGAAGGACTCGTGGATCCTGATATTCAGTGCTGGGGTGACGAAGAAAGTCAAGGCGGCGATCCGCCTCGGCTGTGGGTTCAAAACGGATTGTATCCTGGGACTGCATTTACTAGGAGTATTGGTGATAGTACTGCTGAGAAAATTGGTGTAAATGCTGTTCCTGAGGTCTTAGTTCTTCAGCTTAATCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCAAGCTATGCAGATCCTCAAGATGCTTGCACTGCCATTGCTGCCGAGTCGTACAAATTATGGATGGAACATGAAAATCGAACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGTCTAATTCAGGTGCTGATAATCCTTCCAGCACTGGTCTGGAGACTGCTTCTTCGAGAATTGATTTCTCAGATCTACCCACTGAACCGAACTCTCAACCTGTTGCTGTGACAAATCGAAACCCAGCGATCGTGGTTCCAATGCTGAATAATCAGACATCTTTATAA 1209 40.45 MGCIHTKCCCRYPKSLVGESQDFRQGVPYCLQDKNTVIEKSLEMIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNVQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPIQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLSNSGADNPSSTGLETASSRIDFSDLPTEPNSQPVAVTNRNPAIVVPMLNNQTSL 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27581502 27584933 + MELO3C021385.2.1 Cme11g01952 342615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01952 402 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cme11g01952 402 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Cme11g01952 402 MobiDBLite consensus disorder prediction 351 383 - -
Cme11g01952 402 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 39 357 - -
Cme11g01952 402 Gene3D - 46 347 IPR036457 -
Cme11g01952 402 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 39 357 - -
Cme11g01952 402 CDD PP2Cc 71 345 IPR001932 -
Cme11g01952 402 SUPERFAMILY PP2C-like 47 347 IPR036457 -
Cme11g01952 402 SMART PP2C_4 56 343 IPR001932 -
Cme11g01952 402 Pfam Protein phosphatase 2C 74 324 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00664 Cme11g01952 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01952 Cme-Chr11:27581502 Cme05g00950 Cme-Chr5:13176826 5.32E-28 dispersed
Cme02g01389 Cme-Chr2:20104680 Cme11g01952 Cme-Chr11:27581502 2.93E-141 transposed
Cme11g01952 Cme-Chr11:27581502 Cme06g00664 Cme-Chr6:4280650 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01952 - - csv:101217134 810.831