Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01956 ATGGAAAATGATCAAGAATCCCCTGCTTCTTCTACCAGTAGTAAGACAAACGAGCGAACGTTGCAACGATCGAAGATGTTGGAAGTTTCAATTGTAGAGAAATTGGATCGGCAAGACTCTGCGGATATGGCTACATATGGTCCTATTGAGATTGAAACGTCCGGAAGCAATGATTCAGGCGATATCGATAGTCAAAATCAATCAAAAGATCAGACAAATCAAGCTGCGGGGACTCCCAGTATAGGGAGCAGATCAAGACCGCGTGGATTCTCCGACTCTTTTGCTTCTCATGAGTTGAGATTATTAGATTTGGAAGATGAAACCAAAGATGTGGCATCTCCAAGAGGGGTGCTCGAGGATTGCTCGAGAAGCTTAGATTCTGAAACAACTACTTCTCGGGCCAGCACTTCCGATTGGGAAGGTCATCCGGACTCGAGAAATCCAAGTCATTGGAGAGGGTTCTTTCGTTTACTGAAGAAAGGACCTCAAATGCGATTTCAGACCTTTCCTCCTCTTAAAGCTGTTCCAAAACTCACCAGAAGAAAGAGCAAAAGAATTAGAGAGGATATGATTCCAGTAGTATCACCAGTGATGGACTCTTCTATAGAAACCGAGTTTTGCTATTTCAGATCTTCTTGGAAAAATTTCACCCTTTCAGAGCTTGAAGCTGCATGCAATAACTTCAGCCAAGAAAACTTGATTGGCGAGGGTGGTTATTCTGAAGTTTACAAGGGTCAGTTAGAAGATGGACAACTTGTCGCGATCAAGCGGCTTAATAGAGGTAGCCAAGAGGAGATGACTGCAGACTTCTTGTCTGAGCTTGGAATTATTGTTCATGTTGATCATCCTAATATCGCGAGCGTAATTGGATACGGCGTTGAAGGTGGAATGCACCTTATACTTCATTTATCACCCCATGGGAGCCTGGCATCCATACTTTACGGGCCAAAGGAGAGACTGGATTGGTCGACCAGGTATAAGATTGCTCTTGGAACTGCTGAAGGTCTCCTTTATCTTCATGAAGGCTGCCAAAGAAGAATAATCCACAGAGACATTAAGGCCGCTAATATATTGCTTAGAGATGATTTTGAGCCTCAGATATCTGATTTCGGGCTTGCAAAGTGGCTCCCAGATCAATGGACTCACCATACTGTGTCAAAATTTGAAGGCACATTCGGGTACCTTCCTCCCGAGTTCTTTATGCATGGCATTGTTGATGAAAAAACGGATGTCTATGCCTATGGAGTACTTTTATTGGAACTCATTACCGGACGACGAGCACTGGATAGCTTACAGCAAAGCCTTGTGATGTGGGCTAAACCCCTACTTTCTAAACAGAATCTCAAGGAACTTGTTGATTTATCTCTTGTCGACGCATTTGACTCCGAACAAATGAAACGAATGATATCAATAGCTTCAATGTGCATAAATCAATCTTCAATTCTACGGCCGGAAATGAGTGAGATTGTTCAAATTCTGAAAGGGGATGGAGTTTATAATTTGGAGCTTGTAAAACGACAGAAGTCTAAACTTCAAAGGACATACTCCGAAGAGCTTTTGGATGCAGAAGAATACAATTCTACCAAATATTTAAGTGATATTGATCGACATTTGGAGATTGTTTTAGGTACTTGTCATATTGATGTTTAG 1650 42.12 MENDQESPASSTSSKTNERTLQRSKMLEVSIVEKLDRQDSADMATYGPIEIETSGSNDSGDIDSQNQSKDQTNQAAGTPSIGSRSRPRGFSDSFASHELRLLDLEDETKDVASPRGVLEDCSRSLDSETTTSRASTSDWEGHPDSRNPSHWRGFFRLLKKGPQMRFQTFPPLKAVPKLTRRKSKRIREDMIPVVSPVMDSSIETEFCYFRSSWKNFTLSELEAACNNFSQENLIGEGGYSEVYKGQLEDGQLVAIKRLNRGSQEEMTADFLSELGIIVHVDHPNIASVIGYGVEGGMHLILHLSPHGSLASILYGPKERLDWSTRYKIALGTAEGLLYLHEGCQRRIIHRDIKAANILLRDDFEPQISDFGLAKWLPDQWTHHTVSKFEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRRALDSLQQSLVMWAKPLLSKQNLKELVDLSLVDAFDSEQMKRMISIASMCINQSSILRPEMSEIVQILKGDGVYNLELVKRQKSKLQRTYSEELLDAEEYNSTKYLSDIDRHLEIVLGTCHIDV 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27612220 27616906 + MELO3C021381.2.1 Cme11g01956 342619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01956 549 MobiDBLite consensus disorder prediction 50 90 - -
Cme11g01956 549 Gene3D Phosphorylase Kinase; domain 1 193 302 - -
Cme11g01956 549 MobiDBLite consensus disorder prediction 109 146 - -
Cme11g01956 549 PANTHER OS08G0249100 PROTEIN 73 531 - -
Cme11g01956 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672|GO:0006468
Cme11g01956 549 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 73 531 - -
Cme11g01956 549 Gene3D Transferase(Phosphotransferase) domain 1 305 513 - -
Cme11g01956 549 MobiDBLite consensus disorder prediction 1 91 - -
Cme11g01956 549 SMART serkin_6 228 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01956 549 Pfam Protein kinase domain 229 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01956 549 ProSitePatterns Protein kinases ATP-binding region signature. 234 256 IPR017441 GO:0005524
Cme11g01956 549 ProSiteProfiles Protein kinase domain profile. 228 499 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g01956 549 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g01956 549 SUPERFAMILY Protein kinase-like (PK-like) 208 493 IPR011009 -
Cme11g01956 549 MobiDBLite consensus disorder prediction 123 138 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01956 - - - csv:101216575 1062.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00003 Cme-Chr5:33911 Cme11g01956 Cme-Chr11:27612220 1.03E-156 dispersed
Cme05g01709 Cme-Chr5:26134314 Cme11g01956 Cme-Chr11:27612220 3.82E-148 dispersed
Cme06g01691 Cme-Chr6:18818385 Cme11g01956 Cme-Chr11:27612220 8.00E-146 dispersed
Cme11g01956 Cme-Chr11:27612220 Cme03g00489 Cme-Chr3:7136649 1.39E-74 dispersed
Cme11g01956 Cme-Chr11:27612220 Cme02g00224 Cme-Chr2:1798667 2.89E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g390 . Blo12g00063 . . Bpe04g01182 . Bma04g01062 . Cmo08g01162 . . . . . . . . . . . . . . . Cla06g00524 . . . . . . . Cone15ag0801 Cone7ag0189 . . . Chy11g01451 . . . . . . . . . . . . Cma08g01190 Cma17g00290 Car08g01067 Car17g00266 Cpe12g00242 Cpe17g00108 Bhi12g01765 . . . . . . . . . . . . . Lsi09g01380 . . Cme11g01956
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009081 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 0 1 1 2 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65272 PF07714 PK_Tyr_Ser-Thr 1.20E-40 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01956 Cme_Chr11 FPKM 17.996742 19.909922 24.823503 25.045862 23.915079 23.755756 24.053141 18.705244 19.211906 19.954058