Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01961 ATGGCGCTCTGTATGCTAACTTTTCCTGCTCATGTTAGCCGAGTTGGATTGAAAGAGCATGATGGTTCAAGTGTTGCTGTTTCTTCTCGGTTCTTATGGGGAACGGATCTGGTTTTCCGATTTCAGAAAAGGGTTAATCAGGTCAAGAAAAGGCCAGGTGGGATCTGTGCATCACTTTCAGAGACGGGAGAGTATCCTTCACAGAGGCCACCAACTCCTCTTTTGGATACAATAAACTATCCAATTCATATGAAAAATCTATCCGTCAAGGAGCTTTATCAACTAGCTGATGAAGTAAGATCCGATGTCATCTTCAACGTTTCTAAAACTGGTGGTCACTTGGGTTCCAGCCTTGGCGTGGTGGAGCTCACGGTGGCTCTTCACTACGTCTTCAATGCTCCACAGGACAGAATTTTGTGGGATGTTGGTCATCAGTCTTATCCACACAAAATTCTAACTGGAAGGAGGGACAAAATGTCAACTATTAGACAGACGAACGGGTTGTCGGGATTCACGAAACGCTCAGAGAGTGAGTTTGATTGCTTTGGTGCAGGGCACAGCTCCACCACCATCTCAGCAGGCTTAGGAATGGCTGTGGGAAGGGATCTTAAGGGAAGAAAGAATAATGTGATTGCAGTAATAGGTGATGGTGCCATGACTGCAGGGCAAGCTTATGAAGCCATGAACAATGCTGGGTACCTTGACTCGGACATGATTGTTATTCTTAATGACAACAAACAAGTCTCTTTACCAACTGCAACCCTCGACGGGCCTGTACCACCTGTGGGAGCTTTGAGCAGTGCTCTCAGCAGGCTGCAGTCAAACAGGCCTCTCAGAGAACTGAGAGAGGTAGCCAAGGGTGTCACAAAACAAATTGGTGGTCCTATGCATGAATTGGCTGCAAAAGTTGATGAATATGCTCGTGGGATGATTAGTGGTTCTGGATCAACATTATTTGAGGAGCTCGGACTCTATTATATCGGCCCTGTCGATGGTCATAACGTGGATGATCTTGTCTCCATTCTTAAGGAAGTTAAGAGTACAAAAACCACTGGTCCAGTCCTCATCCATGTTGTCACCGAGAAAGGACGAGGCTATCCGTATGCTGAAAAAGCTGCTGACAAGTACCATGGAGTCACAAAGTTTGACCCTGCTACTGGGAAACAACAGAAATCCAAGGCTCCAACGCAGTCGTACACGACATACTTCGCAGAGGCATTGATTGCAGAAGCTGAAAGGGACAAAGATATTATTGCAATCCATGCTGCAATGGGAGGAGGCACAGGCTTAAATCTCTTTCAAAGACGTTTTCCAACAAGATGCTTTGATGTTGGCATAGCTGAACAGCATGCTGTTACATTTGCTGCTGGTTTGGCTTGTGAAGGCCTTAAACCATTTTGTGCGATATATTCATCATTCATGCAAAGGGCGTATGATCAGGCAAGAATTGGCTTCGTAGTTCATGATGTTGATTTGCAAAAGTTGCCCGTGAGGTTTGCAATGGATAGAGCAGGCTTAGTTGGAGCAGATGGCCCCACTCATTGTGGTTCTTTCGATGTTACGTTTATGGCATGCCTGCCTAACATGGTGGTCATGGCTCCGTCTGATGAGGCCGAACTCTTTAACATGGTCGCTACAGCTGCAGCTATAGATGACCGACCCAGTTGCTTCCGGTATCCACGAGGTAATGGTATCGGCGTAGAGCTGCCACCAGGGAATAAAGGCATTCCTATCGAGGTTGGGAAAGGGAGGATTTTACTTGAAGGGGAAAGAGTTGCCCTGTTGGGCTATGGAACGGCAGTTCAAAACTGTTTGGCTGCTGCATCTATGGTCGAACGCCATGGCTTACGAATAACCGTTGCAGATGGACGTTTCTGCAAGCCACTCGACCGTGCCCTCATCCGAAGTCTAGCTAAATCGCACGAGATTTTAATCACAGTGGAAGAAGGATCGATTGGAGGATTTGGGTCTCATGTCATCCAGTTTCTGGCTCTTGATGGCCTTCTTGACGGCACCTTGAAGTGGAGACCACTAGTCCTTCCCGACCGATACATCGACCACGGATCACCAGCAGACCAACTGGCTGAAGCAGGTCTTACTCCGTCACATATTGCTGCTACAGTATTCAATATGCTAGGACAAACCAGGGAAGCTCTTGAGATCATGACATAG 2172 47.01 MALCMLTFPAHVSRVGLKEHDGSSVAVSSRFLWGTDLVFRFQKRVNQVKKRPGGICASLSETGEYPSQRPPTPLLDTINYPIHMKNLSVKELYQLADEVRSDVIFNVSKTGGHLGSSLGVVELTVALHYVFNAPQDRILWDVGHQSYPHKILTGRRDKMSTIRQTNGLSGFTKRSESEFDCFGAGHSSTTISAGLGMAVGRDLKGRKNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPVPPVGALSSALSRLQSNRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHNVDDLVSILKEVKSTKTTGPVLIHVVTEKGRGYPYAEKAADKYHGVTKFDPATGKQQKSKAPTQSYTTYFAEALIAEAERDKDIIAIHAAMGGGTGLNLFQRRFPTRCFDVGIAEQHAVTFAAGLACEGLKPFCAIYSSFMQRAYDQARIGFVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGSFDVTFMACLPNMVVMAPSDEAELFNMVATAAAIDDRPSCFRYPRGNGIGVELPPGNKGIPIEVGKGRILLEGERVALLGYGTAVQNCLAAASMVERHGLRITVADGRFCKPLDRALIRSLAKSHEILITVEEGSIGGFGSHVIQFLALDGLLDGTLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNMLGQTREALEIMT 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27651454 27655918 + MELO3C021375.2.1 Cme11g01961 342624

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01961 723 CDD TPP_DXS 111 366 IPR005477 GO:0008661|GO:0016114
Cme11g01961 723 Pfam Transketolase, pyrimidine binding domain 398 563 IPR005475 -
Cme11g01961 723 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 719 IPR005477 GO:0008661|GO:0016114
Cme11g01961 723 Gene3D - 396 571 - -
Cme11g01961 723 SMART Transket_pyr_3 397 567 IPR005475 -
Cme11g01961 723 PANTHER BNAA01G35430D PROTEIN 1 719 - -
Cme11g01961 723 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 75 360 IPR005477 GO:0008661|GO:0016114
Cme11g01961 723 ProSitePatterns Transketolase signature 1. 100 119 IPR005474 -
Cme11g01961 723 CDD TPP_PYR_DXS_TK_like 403 561 - -
Cme11g01961 723 SUPERFAMILY TK C-terminal domain-like 576 712 IPR009014 GO:0003824
Cme11g01961 723 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 395 590 IPR029061 -
Cme11g01961 723 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 74 713 IPR005477 GO:0008661|GO:0016114
Cme11g01961 723 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 72 459 IPR029061 -
Cme11g01961 723 Pfam Transketolase, C-terminal domain 581 704 IPR033248 -
Cme11g01961 723 Gene3D - 68 369 - -
Cme11g01961 723 ProSitePatterns Transketolase signature 2. 508 524 IPR020826 -
Cme11g01961 723 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 77 712 IPR005477 GO:0008661|GO:0016114
Cme11g01961 723 Gene3D - 581 713 IPR009014 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01961 K01662 dxs; 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7] - csv:101214927 1420.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01732 Cme-Chr1:24240020 Cme11g01961 Cme-Chr11:27651454 1.39E-48 dispersed
Cme03g01650 Cme-Chr3:25291476 Cme11g01961 Cme-Chr11:27651454 0 dispersed
Cme06g01695 Cme-Chr6:18871239 Cme11g01961 Cme-Chr11:27651454 0 dispersed
Cme06g01696 Cme-Chr6:18913772 Cme11g01961 Cme-Chr11:27651454 0 dispersed
Cme11g01961 Cme-Chr11:27651454 Cme11g02354 Cme-Chr11:30552434 2.64E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g381 . . . . . Bpe14g01154 . . Cmo08g01169 Cmo17g00285 . . . . . . . . . . . . . . Cla06g00518 Cam06g0557 Cec06g0557 Cco06g0564 Clacu06g0545 Cmu06g0542 Cre06g1310 . . Cone7ag0185 Cone4ag0181 . . Chy11g01457 . Blo02g00573 . . . . . . . . . . Cma08g01196 Cma17g00297 Car08g01072 Car17g00273 Cpe12g00249 Cpe17g00103 Bhi12g01753 . . . . . . . . . . . . . Lsi09g01384 . . Cme11g01961
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000430 4 7 2 1 2 4 3 4 3 4 4 4 3 4 4 4 4 5 5 4 3 3 4 3 4 4 5 6 10 4 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01961 Cme_Chr11 FPKM 1.680585 1.507589 10.256703 8.436171 6.786008 6.989653 7.178708 20.903526 20.294378 19.959618