Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01964 ATGAGAGCTTCAAATCCCATCGTTATTTCTGTACTGCTTTTCAGTACTCTTCTTGCTCTTCACGTTGTCAATGGAGCTTTGGTCAATAATTTCTATAGGAGAACCTGCCCTTTAGCTGAGAGAATCATTCAAGACGTTACCTTCCGTCTCGTTCGATCGAATCCTGGCCTCGGTGCACAGCTCCTTAGACTTCAATTTCATGATTGTTTCGTTCGGGGGTGTGATGCATCAATTCTATTAGATACGGTTGGAACAAACCCATCGGAAAAGGAAGCAAGGCCGAACCTATCACTATTAGGGTTTGACGCCATTGACCAAATCAAGTCCGAGGTTGAGAGAGTATGTAGTGGAGTTGTTTCATGTGCTGATATTCTTGCTCTTGCTACCCGCGATGCAGTTTCCTTTCCTTTCAAAAATCGACCCCGCTGGCCAGTCTTAACAGGAAGAAGAGACGGGACGATTTCACGATCATCAGATGTTACCGGCAATATCCCATCGCCGTTCTCCGGCTTTGACACTCTTAAGCAAATCTTCGAGAAGAAAGGGCTAACCGTTAGCGATCTGGTGATTTTATCAGGTGGTCACACAATTGGAGTAGCTCATTGTGGCACTTTCTCAAGGAGGTTATACAACTTCACAGGCAAAGGAGATGCAGATCCTTCCTTAGATCCAAAATATGCAGATTTTCTTAGAACAAAATGTCCAAATCCAGCTGATCCTTCCATCACAGTTGAAATGGATCCAAGAAGTTCTGCTTCTTTCGACTCCAACTATTTCAGAATTCTCACACAAAATAAGGGTTTGTTTCAATCCGACGCCGCGCTTCTCAACAACACTTCTTCGTCCCGACTCGTCAGGTCGTTGCAGAATCCAAGGTTTTTCTCTTCTAGCTTTGCTAGATCCATGTTGAAGATGGCAGCCATTGAAGTCCTCACTGGAAATAATAATGGTGAAATTAGGAAACGATGCCGTTTTGTTAATTAA 984 43.7 MRASNPIVISVLLFSTLLALHVVNGALVNNFYRRTCPLAERIIQDVTFRLVRSNPGLGAQLLRLQFHDCFVRGCDASILLDTVGTNPSEKEARPNLSLLGFDAIDQIKSEVERVCSGVVSCADILALATRDAVSFPFKNRPRWPVLTGRRDGTISRSSDVTGNIPSPFSGFDTLKQIFEKKGLTVSDLVILSGGHTIGVAHCGTFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADPSITVEMDPRSSASFDSNYFRILTQNKGLFQSDAALLNNTSSSRLVRSLQNPRFFSSSFARSMLKMAAIEVLTGNNNGEIRKRCRFVN 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27658964 27661415 - MELO3C021373.2.1 Cme11g01964 342627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01964 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cme11g01964 327 PANTHER PEROXIDASE 13 325 - -
Cme11g01964 327 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 245 260 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 261 278 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 CDD secretory_peroxidase 27 326 IPR033905 GO:0004601|GO:0042744
Cme11g01964 327 Gene3D Peroxidase, domain 2 165 305 - -
Cme11g01964 327 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PRINTS Haem peroxidase superfamily signature 247 262 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Cme11g01964 327 SUPERFAMILY Heme-dependent peroxidases 27 327 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 PANTHER PEROXIDASE 25-RELATED 13 325 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 Gene3D - 30 327 - -
Cme11g01964 327 ProSiteProfiles Plant heme peroxidase family profile. 26 327 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cme11g01964 327 Pfam Peroxidase 47 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00772 Cme-Chr11:9621554 Cme11g01964 Cme-Chr11:27658964 2.90E-100 dispersed
Cme11g01964 Cme-Chr11:27658964 Cme01g02400 Cme-Chr1:32301346 2.98E-81 dispersed
Cme11g01964 Cme-Chr11:27658964 Cme01g00411 Cme-Chr1:2907773 1.29E-100 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01964 K00430 - csv:101215642 583.948