Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01969 ATGGCTCCCTTTCGGAGTGATCGCGTCGACATTGATCGTACGGATACCGAAGTATTTGACGGCTATCTTTCACTGCCTACGTGTTCAGGAACAGTTGATTTTTATGATGACGAGTTTGAAACTCAAGTAGTGAATCTTGCTGGAGAAACTCAAGTAGTGGAGCCTATAAATGATGATTTTGAAACTCAAGTAGTGGAGCCTATAAATGACGATTTTGAAACTCAATTAGTGAATCCCCTTGAAGAAACTCAAGTTCTTGATATTGCACGTGAAACCCAAATATTGAGTGTCTGTGATGAAACCCAGCTACTTGATGATCCCATTCCTGATTGCGTAAAGAATATGGACTTTGACACTCAAATATTGAATGATTTTGATGATGAAATGGCTGGTGATGATTTTTATGATGATCAAGGAACAGTGACAACTGAAATTAATGTTGATGACAATCTACATGATGATGAATCAGCCCAAAGTTTTGATCAATCAGTGGAGGAGAAGGGCCAATTGACCTCTCCTCTTGGATATGATGCGAGGAAAGATTTAGAAGTGCTACCAAATACATTGCCTGAAAATTTTTGTAACTCAGATGAAATAGAAAAGCAGAGATCAAAGGAACCAATAGAAGTTGATTTGAATGCTCTGTTTCAGTGTGAAAAAGAACCGGCAGTTGAACAACAAAATCTGGATTGTTTATCTCAAGCTCAGCTTTGCGAAGTTCCAGCCCATCTGAAAAGATGTTACCTCAAATGGCCTGCCTTTCATCTGGGGCTTGGATATATTCCCCTCAAGAGCGGCTCTTTAGTTGTGTTTCAGAAGTCATGGCAGCAGCTTGTCAGCTCATGTAGTCCCACACGACTTTCTTCATTGCGAGCAGCCTCTTTGCGTGCCTCTGGTTTAGCAGCCCGTTGTTCTGCCATGAAGACTGGAGATGCTGGGCCTTCTGTTACAATTGACAAGGATAAAGAAAAATCATCCTTAAAAGATAATCCTGTTGACCGGCATAACGGTATTGGGCAATCCAATTTGAATGATGGAGATTCAGGTAACGTTAAGTGCAGGGTTGGGAGTTCAGCAGTGAGAAAGCTTTTTACAGATGATTATACCCCTGTGGGGGATTTTGGAGATCTTCACACAAAGCTTGATGCTAGTGACGTTGACCTACATCAGTTGACTGCCTGTGATGGCGATGGTGATCAGTTGGCTGGGTTAAGCTATGTTGACTCTCAAGAACCTGGGGATTTAACACAAGACGACGCTCTTGATTTTGTTGAAAAGTTTCTTAAAGATAATTCTATGGAATTTGGTCTAGGTAAAGGTATGCATAAACGGGATGCTATGGTGCAACCAAAGTCGGTTTCTAATCCAAGAGGACAGTATAATCTGGCTAACATTGTTAACCGTGTAAGAGTAGTTGGAGAATCAAGAGTTTTTGACTGGGATGATAATCGGGAAGATGAAGGAGGTGGTGATATTTTCCGCAGAAGGAAAGAAGAGTTTTTGACCGAACCTCGAAAACCGAAAGGAAGAAAATTAGACTTGAGCGTTGATAAGGAAGCATCTATGAGTACCCAAAATATGAAATCAAGGTTATTTTGTTCTGATTCTCGTCTAGAGTTGAGAAAAGGAAAAGGGAATAATGAGCCATCTCGAGAAGTCAATATCGAATGCAAAAAGAATCTATCCTATACGTTGGATAAGGAGAAAGATGGTGATCCATGTGGGGGAGAGTTGCAAGGCAACGGCATCCAGCCTGATCAACAAGAAGACGCTAATGTAGGTTTTGATACTCAGATAGCAGCAGAGGCAATGGAAGCATTATTCAATGATGAGAATATCCATAAGTTAGTTGATAATGAAACAAATCAACATTTGGAAAATAGTTCAATGGATTCTTTCAGAGGTTCTCCTTCTAGAAAGTCATACTCAAGCTCGAAATTGAGACGATCCTCGAGGGGACATGCCTCTAGTTCCGAGGTTGCTCCTATGCAATCCAAGATAAGAAACCAGAAGTTTTCTGGAGTTATCATGAAAGCATGTGGAAATGAGATTGTAAAATTGTCAAACAGAAGTAAGAAAAGAGATGCTGATGCAATCAATGGGAATGAAAACATTGGCTGTGACTTCAACAATGCATGTAACATGATTCAGAAGCGGCTTTTACGTGGAGAAGTTGTTGAGTTTTCACCTGTTGCATGCCGAACTAGGCATTCAATGATCGTAAATCAATCAAAAAAGGATGAAATTGCATCTAGTGGACGTGACCGGTCAGTTGCAAAGGTAGGTTCGTTAATCAAGAAAAGTAGTGGTGATCAGGGCACTAGGGATTTTGAAGCAAGGAGAACATCTCTAGAGGCAGCATCCAAGACTCTCAAGATGAAGTCAAAAGGTGCCAAAAACAATGCAAAAAAGTCCATGGGAGAACGAGGGTTGTGTGATATGTTAGCTGGTGAGGCAAGTCTGCCTGGTGATCTACTTGGACAAACTATGAATAGGCGCAAGAGGTCACGTAATGTGAAGAAAACACGAGCGTCATTATGTCTTCTTTCACCTCCTTTAAATAAAAACTTGAAAAGACCAACTGTCGGCAGAACAGGTGCAGAAAAAGCTCATAGTGGAACTGTTACCGCTGATATAAATGGTCAATTATCCACTGAAGGTTCCTATCGGCCAAATTCCATTCAGCAGTTAAATAAAAAGAACAATGGATGTTCAGTTTCTTCTGTTGTAAAGACTACGACAGATGAATCTCCTAGTAAAAGGCACAAACCATCTGTCACGGTTTGTACAACACCTGATAACTTAATGACACCTACAAATGCTGTATCACCTGTTTGTATGGGCAGTGAATATTACAAACAATCATGCAAAAAGAACCTCTCAAAATCAAGTCTTTTGAAAGAACTTCGTGATTTAACTGCTTCGGGTCTTGTATCGAGATCTTGTCCAACTGAATCAAGAAAGAGAAAAGATATGAATGATGTTCGAGTCTTGTATAGCCAACACCTTGATGAGGGCATAATCAAACAGCAAAAGAAGACGTTAACTCGCCTAGGGGTTACTGTGGTATCCTCCATGGCTGAGGCAACACATTTCATAGCGGATAAATTTGTACGTACGAGGAATATGTTAGAAGCCATTGCTCTGGGCAAGCTTGTGGTGACACATCTATGGATTGATAGTTGTGGACAGGCAAGCTGCTTCATCGACGAAAAAAGTCACATCCTACGAGACACCAAAAAGGAGAAGGAACTTGGCTTTAGCATGCCAGGTTCATTGGCGTGTGCTCGCCAGCGTCCTCTTCTAGAGTTTTCACAATCGTTAGTGCTACAGGGTCGACGAGTGTTGATCACGCCAAATACAAAGCCCGGGATAGCCATCATTTCAAGCTTGGTCAAGGCGGTAAAGGGTCAAGCAGTAGAGAGGATCGGGAGGTCTATGCTGAAAGATGATCAAATTCCAGATGATTTGTTAGTTTTGTCGTGTGAAGAAGATTACAATACGTGCTTGCCTTTTCTTGAAAAAGGTTGGTTCAAATATTTCTCTCAAGATTTTCCCTGA 3561 41.11 MAPFRSDRVDIDRTDTEVFDGYLSLPTCSGTVDFYDDEFETQVVNLAGETQVVEPINDDFETQVVEPINDDFETQLVNPLEETQVLDIARETQILSVCDETQLLDDPIPDCVKNMDFDTQILNDFDDEMAGDDFYDDQGTVTTEINVDDNLHDDESAQSFDQSVEEKGQLTSPLGYDARKDLEVLPNTLPENFCNSDEIEKQRSKEPIEVDLNALFQCEKEPAVEQQNLDCLSQAQLCEVPAHLKRCYLKWPAFHLGLGYIPLKSGSLVVFQKSWQQLVSSCSPTRLSSLRAASLRASGLAARCSAMKTGDAGPSVTIDKDKEKSSLKDNPVDRHNGIGQSNLNDGDSGNVKCRVGSSAVRKLFTDDYTPVGDFGDLHTKLDASDVDLHQLTACDGDGDQLAGLSYVDSQEPGDLTQDDALDFVEKFLKDNSMEFGLGKGMHKRDAMVQPKSVSNPRGQYNLANIVNRVRVVGESRVFDWDDNREDEGGGDIFRRRKEEFLTEPRKPKGRKLDLSVDKEASMSTQNMKSRLFCSDSRLELRKGKGNNEPSREVNIECKKNLSYTLDKEKDGDPCGGELQGNGIQPDQQEDANVGFDTQIAAEAMEALFNDENIHKLVDNETNQHLENSSMDSFRGSPSRKSYSSSKLRRSSRGHASSSEVAPMQSKIRNQKFSGVIMKACGNEIVKLSNRSKKRDADAINGNENIGCDFNNACNMIQKRLLRGEVVEFSPVACRTRHSMIVNQSKKDEIASSGRDRSVAKVGSLIKKSSGDQGTRDFEARRTSLEAASKTLKMKSKGAKNNAKKSMGERGLCDMLAGEASLPGDLLGQTMNRRKRSRNVKKTRASLCLLSPPLNKNLKRPTVGRTGAEKAHSGTVTADINGQLSTEGSYRPNSIQQLNKKNNGCSVSSVVKTTTDESPSKRHKPSVTVCTTPDNLMTPTNAVSPVCMGSEYYKQSCKKNLSKSSLLKELRDLTASGLVSRSCPTESRKRKDMNDVRVLYSQHLDEGIIKQQKKTLTRLGVTVVSSMAEATHFIADKFVRTRNMLEAIALGKLVVTHLWIDSCGQASCFIDEKSHILRDTKKEKELGFSMPGSLACARQRPLLEFSQSLVLQGRRVLITPNTKPGIAIISSLVKAVKGQAVERIGRSMLKDDQIPDDLLVLSCEEDYNTCLPFLEKGWFKYFSQDFP 1186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27692427 27698376 - MELO3C021370.2.1 Cme11g01969 342632

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01969 1186 ProSiteProfiles BRCT domain profile. 987 1076 IPR001357 -
Cme11g01969 1186 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 64 1184 - -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 307 344 - -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 851 889 - -
Cme11g01969 1186 SMART BRCT_7 989 1066 IPR001357 -
Cme11g01969 1186 SUPERFAMILY BRCT domain 984 1092 IPR036420 -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 568 589 - -
Cme11g01969 1186 PANTHER MEDIATOR OF DNA DAMAGE CHECKPOINT PROTEIN 1 64 1184 - -
Cme11g01969 1186 Gene3D BRCT domain 1108 1185 IPR036420 -
Cme11g01969 1186 Gene3D BRCT domain 984 1097 IPR036420 -
Cme11g01969 1186 CDD BRCT_PAXIP1_rpt6_like 1109 1185 - -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 624 664 - -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 875 889 - -
Cme11g01969 1186 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 983 1074 IPR001357 -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 315 331 - -
Cme11g01969 1186 CDD BRCT_MDC1_rpt1 1008 1069 - -
Cme11g01969 1186 MobiDBLite consensus disorder prediction 908 931 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01969 K20780 MDC1; mediator of DNA damage checkpoint protein 1 - csv:101217520 1628.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02162 Cme-Chr1:30448639 Cme11g01969 Cme-Chr11:27692427 1.62E-08 dispersed
Cme08g02275 Cme-Chr8:29767327 Cme11g01969 Cme-Chr11:27692427 4.57E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g376 . Blo12g00044 Bda03g01216 . . . Bma04g01089 . Cmo08g01172 Cmo17g00291 . . . . . . . . . . . . . . . . . . . . . Cone14ag0793 Cone15ag0794 . . . . Chy11g01463 . . . . . . . . . . . . . . Car08g01075 Car17g00277 Cpe12g00254 Cpe17g00100 Bhi12g01748 . . . . . . . . . . . . . . . . Cme11g01969
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010432 1 1 1 1 1 1 2 0 1 1 0 1 0 1 1 2 1 3 2 1 1 1 1 1 1 0 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01969 Cme_Chr11 FPKM 4.768817 6.070036 8.201843 7.799046 7.635346 5.841633 6.082299 6.749764 7.331891 6.134349