Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01970 ATGGATTGTAACAAAGATGAAGCCATTAAAGCAAGGGAAATTGCTGAGAAGAAGATGGCAGGCAAAGATTTCATAGGGGCTCGTAAACTTGTTCTCAAGGCTCAACAGCTAAATCCTGATGCAGAGTATATTTCACAAATGCTTATGGTTTGTGACGTGCATTGTGCGGCAGAGAAGAAATTGTTTGGTAATGAGATGGATTGGTATGGCATCCTTCAGATTGAGCAAACGGCGAATGAGGCGACAATCAGGAAGCAATACCGGAAGTATGCTCTTCTACTTCATCCTGATAAAAACAAATTTATTGGTGCAGAAGCTGCTTTCAAGTTGGTTGGTGAAGCTCAGAGAGTGCTGTTGGACCATGAGAAACGTCGAATGCATGATATGAGACGCAAGCCAGCTATACCATATCGACCTCCCCATAGAGCTGCTTCAACCTTTAATGTTGGAGTTCAAGCTAATTACAGAAGCAACTTTACAACCTTCATTCCTCAACATCAACCGCCTCCTCAACCGCAAGGACATTCAGGGTTCAGTCATAATCGTTCAACTTTTTGGACTGTCTGTCCATTTTGTTCAGTAAGGTACCAGTACTATAAAGAAGTGGTTAATAGATCACTTTGCTGTCAGAATTGCAAGAAGCCCTTTGTTGCATATGATATGGAACTACAAGGGGCTCACCCTCAGCCTATGTCTAACTTGAACCAGACATCATTTTTTCAGCAGCAGAATTCCTTCAATCACAGGCCTGAGATGGGACGCCCGGGAAACTCTCAGTCTGAGAAGCGTCAAGGAAAACGCAACACCTCAGTTACTGCTTCAGAAAAGATCAATGGTAAAAAAAGAAGGAAGCAGACTTCTGAATCTAGTGAGAGTTGTGATACAGAAAGCAGCTTAGAAACAGACGAAAATGGTGTTACTGATGATGATAGCAGCAGAAAGGATGTTGGACACTCTGGAGACCACCGTCCAAGAAGATCTAGTCGACGAAGGCAGAAGATTTCTTACAATGAGAATGGAAGCGATGATGACAATGACGACATTGAGGTCACTCACAAAAGATCAAAGAGAAGAAAATCATCTATCGTTTCAGATGATGATATTGAGGAAGTATCTGTTGCTGTGGATGATGATCAGACGGATACGAATAAGCCAGAAAATCATTGCTCTGAAGAGGATTTATCACGGAGAAGCAAGGGAAGTAAGAAGGAAAACCATAAAGAAACGACAGATCAGGATGTTTCTCAGGGAAGCATGGAGTCAGCTGGTGATCCTGAGTCTAATCTGCTTTCATGTTCTGATCCTGATTTCCATGATTTTGATCAGCTGCGGAACCGAGAATGTTTCGCTCTTGGGCAGATCTGGGCTATGTATGATGATATTGATACTATGCCTAGATTCTATGCTTGGATAAAAAAGGTGTTTCCTTCTGGATTCAAAGTTCAAATCACTTGGCTAGAGCCAGAAGCATCCGTTGATGGCAGAAGAAAATGTGTTGATAAAGAAATGCCAGTTTCTTGCGGTGAGTTTGTGTTTGGAGCAACTGAAACCATGACAGATTGTGATTCGATGTTTTCTCATGCTGTTTCATGGGTCAAAGGCTGCCATAAAGACAGTTTCAAGATTTACCCAAGGAAAGGGGAAATTTGGGCTCTCTTCAAGAATTGGGATAAGAACCGTGAGTGCGATTCCAATGGTCAATATGAGTATGAGTTTGTTGAGATATTGTCGGAATTTACTGAAGAAGCTGGTATTGATGTTGCACTCTTAGCTAAGGTGAAAGGTTTTTCTAGTCTCTTTTGTCGAATGGTCAAGGTAGGAGAAAAATCATATCAAGTCCCTGCCGCTGAATTGTTTAGATTTTCGCATCGGGTTCCTTCGTTTCCACTCACTGGTGATGAAAGAGAGGATGTCCCAAGAGGTTCTTTTGAACTGGATCCAGCTGCTCTTCCCCCCAATCTTCCAGAGATCATCCTTCCTGAGCATATAAAAGAGGTGGCTTCTGATATTCGTGCTGTAGCTTCGCCGAGTGAGGCTTATGAGATTCCAGATCCTGAATTTCACAACTTTGATCTTGAGAAATCTATTGAGAAGTTTAGGATTGGTCAAGTCTGGTCACTGTACAGTGACGAGGATGCCTTACCGAGGTACTATGGTCTGATCAAGAAAGTAACTCGTGAACCATTCGAAGTGAAGTTGACTTGGCTGGTGTCCTCTACACTGCCAAGTGACACAGTCAAATGGCACGATAAACGCATGCCGATTTCTTGTGGGAGATTTACAACTCAAAGGCGGACTGCTATGCACCGCTACACTTCAATCGACTCCTTTTCGCATCTGCTTAGAGCTGATCCTGCTCCTAATAATGCCTTCTCAATCTCTCCTAGAATTGGTGAAGTTTGGGCATTATACAAGAACTGGACTCCCGAAATCAGGTGTTCGGATTTGGATAAATGTGAATACGATATAGCAGAAGTCATCGATGATGACGATTTACAAAAAGAAGTTATGTTCTTGAAACGCGTCGATGGATATAACTCAGTCTTTAAGGCTCAAACCAAAAATGATGGTTCCACACTCACTATGTTAATTACCGATGCCGAAATTCTTCGATTCTCCCATCAGATACCTGCTTTTCGGTTGACAGACGAACGGGGTGGTAGCTTGAGAGGCTGCTTGGAACTTGATCCTGCCGCTTTACCAGTATATTATTTTTCTTGA 2721 42.56 MDCNKDEAIKAREIAEKKMAGKDFIGARKLVLKAQQLNPDAEYISQMLMVCDVHCAAEKKLFGNEMDWYGILQIEQTANEATIRKQYRKYALLLHPDKNKFIGAEAAFKLVGEAQRVLLDHEKRRMHDMRRKPAIPYRPPHRAASTFNVGVQANYRSNFTTFIPQHQPPPQPQGHSGFSHNRSTFWTVCPFCSVRYQYYKEVVNRSLCCQNCKKPFVAYDMELQGAHPQPMSNLNQTSFFQQQNSFNHRPEMGRPGNSQSEKRQGKRNTSVTASEKINGKKRRKQTSESSESCDTESSLETDENGVTDDDSSRKDVGHSGDHRPRRSSRRRQKISYNENGSDDDNDDIEVTHKRSKRRKSSIVSDDDIEEVSVAVDDDQTDTNKPENHCSEEDLSRRSKGSKKENHKETTDQDVSQGSMESAGDPESNLLSCSDPDFHDFDQLRNRECFALGQIWAMYDDIDTMPRFYAWIKKVFPSGFKVQITWLEPEASVDGRRKCVDKEMPVSCGEFVFGATETMTDCDSMFSHAVSWVKGCHKDSFKIYPRKGEIWALFKNWDKNRECDSNGQYEYEFVEILSEFTEEAGIDVALLAKVKGFSSLFCRMVKVGEKSYQVPAAELFRFSHRVPSFPLTGDEREDVPRGSFELDPAALPPNLPEIILPEHIKEVASDIRAVASPSEAYEIPDPEFHNFDLEKSIEKFRIGQVWSLYSDEDALPRYYGLIKKVTREPFEVKLTWLVSSTLPSDTVKWHDKRMPISCGRFTTQRRTAMHRYTSIDSFSHLLRADPAPNNAFSISPRIGEVWALYKNWTPEIRCSDLDKCEYDIAEVIDDDDLQKEVMFLKRVDGYNSVFKAQTKNDGSTLTMLITDAEILRFSHQIPAFRLTDERGGSLRGCLELDPAALPVYYFS 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27700433 27707397 - MELO3C021368.2.1 Cme11g01970 342633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01970 906 MobiDBLite consensus disorder prediction 246 275 - -
Cme11g01970 906 MobiDBLite consensus disorder prediction 246 430 - -
Cme11g01970 906 Pfam DnaJ domain 67 128 IPR001623 -
Cme11g01970 906 CDD DnaJ 67 120 IPR001623 -
Cme11g01970 906 SMART dnaj_3 66 123 IPR001623 -
Cme11g01970 906 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Cme11g01970 906 Gene3D DnaJ domain 64 178 IPR036869 -
Cme11g01970 906 MobiDBLite consensus disorder prediction 306 322 - -
Cme11g01970 906 MobiDBLite consensus disorder prediction 414 428 - -
Cme11g01970 906 SUPERFAMILY Chaperone J-domain 64 154 IPR036869 -
Cme11g01970 906 MobiDBLite consensus disorder prediction 276 290 - -
Cme11g01970 906 PANTHER - 1 664 - -
Cme11g01970 906 PANTHER - 674 905 - -
Cme11g01970 906 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 664 - -
Cme11g01970 906 MobiDBLite consensus disorder prediction 377 413 - -
Cme11g01970 906 PRINTS DnaJ domain signature 87 102 IPR001623 -
Cme11g01970 906 PRINTS DnaJ domain signature 103 123 IPR001623 -
Cme11g01970 906 PRINTS DnaJ domain signature 69 87 IPR001623 -
Cme11g01970 906 MobiDBLite consensus disorder prediction 331 366 - -
Cme11g01970 906 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 674 905 - -
Cme11g01970 906 Pfam Domain of unknown function (DUF3444) 428 634 IPR024593 -
Cme11g01970 906 Pfam Domain of unknown function (DUF3444) 678 884 IPR024593 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01970 - - - csv:101214527 1665.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00143 Cme-Chr2:1071792 Cme11g01970 Cme-Chr11:27700433 1.61E-34 dispersed
Cme09g01971 Cme-Chr9:23609620 Cme11g01970 Cme-Chr11:27700433 4.74E-34 dispersed
Cme11g01970 Cme-Chr11:27700433 Cme11g02014 Cme-Chr11:28025748 2.71E-13 dispersed
Cme11g01970 Cme-Chr11:27700433 Cme04g00239 Cme-Chr4:1883858 1.70E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g375 . . . . Bpe04g01172 . . . Cmo08g01173 Cmo17g00292 . . . . . . . . . . . . . . Cla06g00511 Cam06g0550 Cec06g0550 Cco06g0557 Clacu06g0536 Cmu06g0536 Cre06g1304 . . . . . . Chy11g01464 . . . . . . . . . . . . Cma08g01199 Cma17g00302 Car08g01076 Car17g00278 Cpe12g00255 Cpe17g00099 Bhi12g01747 . . . . . . . . . . . . . Lsi09g01390 . . Cme11g01970
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004670 2 2 0 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 4 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme11g01970 Cme_Chr11 FPKM 14.459398 13.721354 17.310429 15.103691 20.251186 21.793255 21.507523 24.595402 24.964235 21.283461