Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01975 ATGGCGCCTGAAATGGTGGTCGAATCGGGCTTGTCGATGGTGGATTTTGGGAAGGAGTTGGTGGCGGATCATACCTCGGTAGTTTCTTTGAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTGTTGGCCATTTGTTAGAGGAAAATCGATGGATCAACGAGTCCATTACAGCCCTTGTCATTGGATTGTGTACCGGCATCATAATATTGGTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTATTCAATGAAGAGCTTTTTTTCATTTATCTCCTTCCGCCTATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCGTTAGGCGCTTTGCACTTCTTCCAAAAAATGAATATTGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCAATTTTTTCCGCAACAGACTCTGTTTGCACCTTACAGATTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGACGTTTCTCACATGAATTCAAGCATAGTTCTGCAGTTCATCGGGAACTTTTTGTACCTGTTCCTTGCAAGTACTGTACTGGGAATTTTTGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGACATTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCAGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTACACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCATTTGTCGCTGAAATCTTTATCTTTCTTTACGTTGGCATGGATGCTTTAGATATCGAGAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGTGTTAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTGTCCTCATTGTCCAATCTGACCAAGAAGTCCTCGCATGAGAAACTCAACTTGGAGCAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTATCGATGGCACTTGCATATAATCAGTTCACCAGGTCAGGGCACACCCATCTACCAGGCAATGCAATCATGATCACTAGTACCATCACAGTTGTTCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCACTAATAGGAATATTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCTTCTTCTCCAAAATCCTTCACTGTCCCACTCCTCGACAATGACCAAAATACCCCTTCCCCTCTTGACCTGTTTCTGAGAATCCCATCCCATACGGTTCACCATTACTGGCGAAGATTTGACGACGCCTTCATGCGACCGGTGTTCGGAGGACGGGGCTTTGTGCCCTTCGTCCCAGGCTCCCCAACGGAAGACCCAACACAACAATGGCAAACTGAGGGAGCAGAAGCCATTGATGAAAATAAAACCATTCTTATACAAACTCGAAGATAG 1662 43.08 MAPEMVVESGLSMVDFGKELVADHTSVVSLNLFVALLCGCIVVGHLLEENRWINESITALVIGLCTGIIILVTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDVSHMNSSIVLQFIGNFLYLFLASTVLGIFVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKSSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTVPLLDNDQNTPSPLDLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPTQQWQTEGAEAIDENKTILIQTRR 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27727998 27735696 - MELO3C021364.2.1 Cme11g01975 342638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01975 553 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cme11g01975 553 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cme11g01975 553 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cme11g01975 553 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Cme11g01975 553 Gene3D - 150 201 - -
Cme11g01975 553 PANTHER SODIUM/HYDROGEN EXCHANGER 18 534 IPR018422 GO:0006812|GO:0015299|GO:0016021
Cme11g01975 553 Pfam Sodium/hydrogen exchanger family 32 445 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cme11g01975 553 PANTHER SODIUM/HYDROGEN EXCHANGER 3 18 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00977 Cme-Chr1:11494596 Cme11g01975 Cme-Chr11:27727998 8.99E-164 dispersed
Cme01g02167 Cme-Chr1:30488843 Cme11g01975 Cme-Chr11:27727998 8.68E-46 dispersed
Cme01g02168 Cme-Chr1:30497291 Cme11g01975 Cme-Chr11:27727998 5.21E-126 dispersed
Cme02g00152 Cme-Chr2:1124312 Cme11g01975 Cme-Chr11:27727998 0 dispersed
Cme11g01975 Cme-Chr11:27727998 Cme12g00785 Cme-Chr12:14232255 5.98E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01975 - - csv:101215493 1036.56