Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g01977 | ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCCCCGCCTCCCACCGATGCCCTTGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGAAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGAGTTCGGTTTTGGGATTGTTAACAATTTGGTGGAAATGTTTTGATATTTTTGCTCCTGGAAATTTCAAATCCATAACTGCACTAAATGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCAACCTACACAGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACGAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGATGGCTGCATTTTTCTGTAGATATCAACCAAATGCTCAACAGTTCATGTGA | 735 | 47.21 | MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQSSVLGLLTIWWKCFDIFAPGNFKSITALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRMAAFFCRYQPNAQQFM | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 27746532 | 27750497 | + | MELO3C021363.2.1 | Cme11g01977 | 342640 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g01977 | 244 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 3-RELATED | 5 | 228 | - | - | |
Cme11g01977 | 244 | PRINTS | Tubby superfamily signature | 163 | 187 | IPR000007 | - | |
Cme11g01977 | 244 | PRINTS | Tubby superfamily signature | 147 | 163 | IPR000007 | - | |
Cme11g01977 | 244 | PRINTS | Tubby superfamily signature | 212 | 239 | IPR000007 | - | |
Cme11g01977 | 244 | SUPERFAMILY | Tubby C-terminal domain-like | 118 | 231 | IPR025659 | - | |
Cme11g01977 | 244 | PANTHER | TUBBY-RELATED | 5 | 228 | - | - | |
Cme11g01977 | 244 | SUPERFAMILY | F-box domain | 27 | 78 | IPR036047 | GO:0005515 | |
Cme11g01977 | 244 | Pfam | Tub family | 127 | 229 | IPR000007 | - | |
Cme11g01977 | 244 | Pfam | F-box domain | 35 | 82 | IPR001810 | GO:0005515 | |
Cme11g01977 | 244 | Gene3D | Tubby Protein; Chain A | 116 | 242 | IPR025659 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme06g00687 | Cme11g01977 | CCT | |
Cme06g00687 | Cme11g01977 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme07g01658 | Cme-Chr7:22249029 | Cme11g01977 | Cme-Chr11:27746532 | 1.50E-67 | dispersed | |
Cme08g00854 | Cme-Chr8:5627200 | Cme11g01977 | Cme-Chr11:27746532 | 8.58E-61 | dispersed | |
Cme11g01977 | Cme-Chr11:27746532 | Cme06g00687 | Cme-Chr6:4481950 | 1.87E-115 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42235 | PF01167 | Tub | 1.60E-33 | CL0395 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g01977 | K19600 | - | csv:101203437 | 394.815 |