Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01977 ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCCCCGCCTCCCACCGATGCCCTTGACCAGAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGAAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGAGTTCGGTTTTGGGATTGTTAACAATTTGGTGGAAATGTTTTGATATTTTTGCTCCTGGAAATTTCAAATCCATAACTGCACTAAATGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCAACCTACACAGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACGAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGATGGCTGCATTTTTCTGTAGATATCAACCAAATGCTCAACAGTTCATGTGA 735 47.21 MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQSSVLGLLTIWWKCFDIFAPGNFKSITALNDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRMAAFFCRYQPNAQQFM 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27746532 27750497 + MELO3C021363.2.1 Cme11g01977 342640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01977 244 PANTHER TUBBY-LIKE F-BOX PROTEIN 3-RELATED 5 228 - -
Cme11g01977 244 PRINTS Tubby superfamily signature 163 187 IPR000007 -
Cme11g01977 244 PRINTS Tubby superfamily signature 147 163 IPR000007 -
Cme11g01977 244 PRINTS Tubby superfamily signature 212 239 IPR000007 -
Cme11g01977 244 SUPERFAMILY Tubby C-terminal domain-like 118 231 IPR025659 -
Cme11g01977 244 PANTHER TUBBY-RELATED 5 228 - -
Cme11g01977 244 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Cme11g01977 244 Pfam Tub family 127 229 IPR000007 -
Cme11g01977 244 Pfam F-box domain 35 82 IPR001810 GO:0005515
Cme11g01977 244 Gene3D Tubby Protein; Chain A 116 242 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00687 Cme11g01977 CCT
Cme06g00687 Cme11g01977 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01658 Cme-Chr7:22249029 Cme11g01977 Cme-Chr11:27746532 1.50E-67 dispersed
Cme08g00854 Cme-Chr8:5627200 Cme11g01977 Cme-Chr11:27746532 8.58E-61 dispersed
Cme11g01977 Cme-Chr11:27746532 Cme06g00687 Cme-Chr6:4481950 1.87E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42235 PF01167 Tub 1.60E-33 CL0395 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01977 K19600 - csv:101203437 394.815