Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01986 ATGGCGAAACCCTCGAAGCGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGTTCTAGCTCGTCGGAGGAAGAGGAGCAAACTAACGACCAGATCAATGAGGAGGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGACGATTCTGATAACGATGGATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGAGGGCCAAGATGATAAAACTGATATTGGGCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGACATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAACAAACTGAGATATTTGCTCATTTTGCTAAAGGCGATCATTCTTCTTCCCAGAAGAAAACGAAGGGAAGGGGTCGCCATGCATCAAAACTAACTGAAGAAGAAGAAGATGAAGAATATCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAATACTCGTATCCAAGGGAAAATGAGAGATTATCAACTAGCTGGATTAAACTGGCTCATTCGGCTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCGTTGTTGGGCTATCTGCACGAGTACAGAGGAATAACAGGTCCCCATATGGTAGTTGCTCCAAAATCTACTCTGGGAAATTGGATGAATGAAATTCGTCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTCGTTGCTGGGAAATTTGATGTATGTGTTACCAGTTTTGAAATGGCCATTAAGGAGAAGTCTTGCTTGCGCCGTTTTAGTTGGCGCTACATTATTATTGATGAAGCCCATCGGATTAAGAACGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACACCGCTTCAGAACAATCTTCATGAACTGTGGTCTCTCCTCAATTTTCTTTTGCCTGAAATATTTAGTTCAGCCGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAACAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCAGATGTAGAGAAAGGTTTACCTCCAAAAAAGGAAACAATACTCAAAGTAGGCATGTCGCAAATGCAAAAACAATACTATCGTGCTTTGCTGCAAAAGGATCTTGAAGTTGTTAATGCTGGTGGTGAGCGTAAACGGCTACTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAGCTTTGTGTTCAAGGATGCGCTGATGATCATGCTTTAGTGACTCATTCATTAACACTGAAAATTTCATTAATAGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCTAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTAGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTATTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCTGGAAGTGAAAAATTTGTTTTCTTATTGTCAACTAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTGCAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGGTTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCGCTCGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGGTTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGACGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACTGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTACGATTTTGATGATGAAAAGGACGAGAATAAATTTGACTTCAAGAAAATTGTCAGTGAAAATTGGATCGAACCACCTAAAAGAGAACGGAAGCGGAATTACTCAGAATCAGAATACTTTAAGCAAACGATGCGGCAAGGTGGTCCAACAAAACCAAAAGAGCCCAGGATACCTCGCATGCCTCAGTTGCACGACTTCCAGTTTTTCAACACACAGAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAACCAGTTGAAAGACACAATAGATGTCGAGGAGCCGGAAGAAGTGGGCGATCCTTTGACTGCCGAAGAGCTAGAGGAGAAGGAGCGGCTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGAGCTTGTGAGAAATATGGGCGAAACGATATAAAAAGTATTTCTTCAGAGATGGAAGGAAAAACGGAAGAAGAAGTTGAGAGATATGCAAAGGTCTTTAAGGAGCGATACAAAGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCTCGTAAAGACGAAATAATGAAAGCCATTGGGAAGAAACTGGATCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGCAAGTTGTATAACGAAGAATGCGATCGTTTCATGATATGCATGGTTCACAAGCTTGGTTACGGAAACTGGGACGAACTTAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTATCAAGTCGCGAACGACCCAAGAACTTGCGAGGAGGTGTGATACCTTAATCCGATTAGTGGAGAAAGAAAACCAGGAACATGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTTGCGAAGAGTATGACACCATCAAAACGTTCCTTAGCAAGGCAGACCGAGAGCCCAACTAATCTAAAGAAGAGGAAGCAATTATCAATGGACGATTATGTAAACTCCGGAAAACGAAGGAAGTAA 3279 42.21 MAKPSKRQASSDEAMSNGSSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEEDGSNEGQDDKTDIGRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKSCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKLCVQGCADDHALVTHSLTLKISLIGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSISSEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNLKKRKQLSMDDYVNSGKRRK 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27796556 27805514 + MELO3C021353.2.1 Cme11g01986 342649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01986 1092 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 514 1092 - -
Cme11g01986 1092 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 495 - -
Cme11g01986 1092 Coils Coil 93 113 - -
Cme11g01986 1092 CDD SANT 871 915 IPR001005 -
Cme11g01986 1092 Pfam Helicase conserved C-terminal domain 520 632 IPR001650 -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 142 184 - -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 9 26 - -
Cme11g01986 1092 Pfam SNF2-related domain 204 471 IPR000330 GO:0005524|GO:0140658
Cme11g01986 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 408 714 IPR027417 -
Cme11g01986 1092 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 368 IPR014001 -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 1 90 - -
Cme11g01986 1092 SUPERFAMILY Homeodomain-like 923 1045 IPR009057 -
Cme11g01986 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 406 IPR027417 -
Cme11g01986 1092 SMART sant 970 1031 IPR001005 -
Cme11g01986 1092 SMART sant 868 917 IPR001005 -
Cme11g01986 1092 Coils Coil 22 42 - -
Cme11g01986 1092 Pfam SLIDE 925 1035 IPR015195 GO:0003677|GO:0005634|GO:0006338
Cme11g01986 1092 CDD SF2_C_SNF 518 643 - -
Cme11g01986 1092 Gene3D - 956 1059 - -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 1036 1056 - -
Cme11g01986 1092 SMART helicmild6 548 632 IPR001650 -
Cme11g01986 1092 Gene3D - 412 730 IPR027417 -
Cme11g01986 1092 Gene3D - 868 922 - -
Cme11g01986 1092 Gene3D ISWI, HAND domain 769 867 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cme11g01986 1092 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 780 870 IPR036306 GO:0003677|GO:0006338|GO:0031491
Cme11g01986 1092 Gene3D iswi atpase 923 955 - -
Cme11g01986 1092 Pfam HAND 781 863 IPR015194 GO:0003677|GO:0006338|GO:0031491
Cme11g01986 1092 MobiDBLite consensus disorder prediction 53 78 - -
Cme11g01986 1092 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 522 673 IPR001650 -
Cme11g01986 1092 ProSiteProfiles SANT domain profile. 867 919 IPR017884 -
Cme11g01986 1092 SMART ultradead3 187 379 IPR014001 -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 1036 1092 - -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 27 42 - -
Cme11g01986 1092 Gene3D - 192 407 IPR038718 -
Cme11g01986 1092 MobiDBLite consensus disorder prediction 1070 1092 - -
Cme11g01986 1092 CDD DEXHc_SMARCA1_SMARCA5 188 408 IPR044754 GO:0005524
Cme11g01986 1092 SUPERFAMILY Homeodomain-like 871 921 IPR009057 -
Cme11g01986 1092 Coils Coil 1029 1052 - -
Cme11g01986 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 514 1092 - -
Cme11g01986 1092 PANTHER SNF2/RAD54 HELICASE FAMILY 9 495 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01986 K11654 SMARCA5, SNF2H, ISWI; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-] - csv:101221495 1983.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00595 Cme-Chr1:4727641 Cme11g01986 Cme-Chr11:27796556 5.34E-38 dispersed
Cme06g00682 Cme-Chr6:4421398 Cme11g01986 Cme-Chr11:27796556 3.88E-124 dispersed
Cme07g01716 Cme-Chr7:22666005 Cme11g01986 Cme-Chr11:27796556 2.42E-144 dispersed
Cme08g00028 Cme-Chr8:224292 Cme11g01986 Cme-Chr11:27796556 1.38E-107 dispersed
Cme08g02245 Cme-Chr8:29099343 Cme11g01986 Cme-Chr11:27796556 4.30E-31 dispersed
Cme11g01217 Cme-Chr11:18425067 Cme11g01986 Cme-Chr11:27796556 1.76E-64 dispersed
Cme11g01986 Cme-Chr11:27796556 Cme11g02289 Cme-Chr11:29972967 4.48E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42236 PF00176 SNF2_N 1.30E-71 CL0023 Cme TR