Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g01992 ATGGTGGGCTCTGTTGAGCCGATGATGATGGGGGATTGCATTGAGATGGAAGAAGGCGAAGCTTCTTGCTATCACAAGGATAATGGCGGTGATATTGACCCTGACATTAATCTCTCTTACATCGATGAGAAGATCGAGCGTTTTCTTGGTCACTTCCAAAAAGACTTTGAAGGTGGAGTTTCAGCTGAAAAGTTAGGGGCAAAGTATGGTGGTTATGGCTCATTTTTGCCTACATATGAACGCCCTTCTTCAATTTTGCCACACAATTTAAATCAACAGAGAGACTGCAATGCAGCACCACCTCCCGTTAATTTTCCCTTGGAGGGTTCTTCTCAGAATCCAAAAGCTCCACCGACAAAGAGACCGGAAGCTTTTGTCTGCAATACTATTTCCTCTCGTAATACAAGGGAAATGTCCGGAAGTATCTCCGGGAGAGTAGAATCGTGCTTGCCGGCTACTAAAGTTACTAATAGTTGCCCTTCGAAAGGTGAAGCTTCAGGCAGATTAGGCAGCCCAATGAATAGCGGATCCCTTAAATTTCGAATCAAAGTTGGTTCTGACAGTGTTGGATTGAAAAATGCTGCAATATACAGTGGCCTTGGACTTGAGGACTCTCCATTGTCATCCTCACTAAACAGCTCGGACTTAAGTGAAGGGATGCTGCCCTTATCTCAAGGCCCACCTGATGAGTCTCCGTCTAAGATAATTCAGGCAATGACTTCTTTCCCCGTACCCCATGGAGCATTGATATCACCTCTTCATGATAGCCTACTTTGTTTGTCAAGGAAGGAAAAACCATTACCATTACCCAAACCTGTGCCTTCTCTTGAGAATAAAAAAGATGGTTTGGCCAAGCTAGCCAATGAGACAACTTTGAAGCAAAATGACAGTACATTGGTTAAGAAGAAGAAAAAGGAGGTGGTGCATAGAGAAAAGCAAGTCAATCTTAAGAATGAAGTTCATGCTTCTCGTGGCGAGGAGAAAAATACTCTAACACTTAAACGAAAATTAGACAATGAGGCTTTTGAAAGCAAGGAATTCTTGCCTAATAAGTTGCAATGCAAACCTGGTTTAGAGGGTACAAAGTCCAGTGCTTACTTAGACTCACAAAAGAAGCTTTCTCATAAAGCTACACTACATGAAGCAGTTAAACAGAAGGCACTGATCAAGAAAGAAAAGCCTGAAATTGTGGGTGAGAAAAAATTTAAAGTGGTACAGACTGCTGGTGGGAAAATAGCTGGTACAATTGAGGGAGGCTTCAAGGTTAGAAGTGAAGCATCCAGAGGTAGAAAGAACACTGATTCTGACACTCCTGAATCCGAAAATAGAAGGCACAGGTTAAAACTTCACAGCAATGAGAAAGTAGGAGCAAACAATGTAGATTCTTTTAACAGCTCTGGGTTAGATGTAAACCGTATAAGTAAGGATGCAACTGAGAGGGCCTCTGTTGACTTTCAGAAGGTTAAAGGCCTGGATGACAGTGGAATCAAAATGTCCAAATGCTCAAAGGTGGTTGAACCAGCAGGGGTGGCTCCTATGGATGAATGGGTATGCTGTGACATTTGCCAGAAGTGGCGCCTTCTGCCCTTTGGGACAAAACCAGATCAACTTCCTGATAAATGGTTGTGTAGCATGCTAGATTGGCTGCCTGGGATGAACCGTTGTGACATTAGTGAGGAGGAGACAACAGAAAAGCTTTATGCTTTGTACCAGTTACCATTGCCTCAGAGTGGAAATGCTTTTCAGAACCATGCCAATGGACTGATATCAGCTGATACTTCAAATCAAGGAAAAAAGAACGAAACTTTGAGAGAAATACAAAATCCAGTTTGCAGAATTGACCAGACTCATGGAAAAAGTTCTCTTAAAGACCAGCAGCTGGAGTTGAGGAAAAATAAAAGTCTTAATGGCTTGAGTAATCCTCCAAATAAATTGAGAAATTCAATGAATCAATCTTCCAGTGACCTGAACAACTTGGGAGAGGCGAAGAACAGAGGTAAACTGAAAGAAAAGTCCACTGATAGAGTTAATTGCGACCAATTAAAAAGGAAGAACAAGAGACCTGAAGAAATGCGCTCTGTTGATAATCATCAAAACTTCAATATGGATGTTGGAAAGTTGGGTGGCAGTTCAAATTCTGGTTTGTCAAATATGGAAGGTGGGGAAGGATTGCTGAAGCAGGGTGATATTGGCTCCAAGAAGCACAATAAATTGAACATGGAAAATAAAATGCAAATCTCATTGAAGAAACGGGGAGGAACCACCGAGATCTCCTCTGTTGTTAGGTCCTCTGTTAATCAACCAAGTGGTAAAAGTGCCTTGACAAAGAAAAGGAAACTGAATGATTGGCAAGATGATCAAAATTCTCCTAATAGTGGAGTCCATGAATCCGTGCCTTTGAAGGAAGAAAATTGTGAAAAGTTGAGGAAGAGAAAGAAGCTTGATGTATCTAATAATTTCACTGATGGAATGGAAGAAATCAGCAAGGATAAGGAGGCAAAAATGCAAATGAAGAAGATAATTGCTAAACAAACATCAGTTCGTAAGGAGTTAACCAAGAGAAATTTAGTTGCTCGACAAGTTTCAGCTGCAGCTAATTCTAGCTCTTCAAATGTTTCTCAATCTCATTTAACGAAAGCCGTAGTGAAAGTATCTCCTGCTGAATCAGTTTCATCATCTCCCATGAGGTCATCTGGGCTCGATCAATTTGGAGGAGAGAAAGAGGAGATTACCTCTAATATTCATCCCAGCTCTCATGCTCTCAACACGAACAGCAAGAAAATCAAAGCTTCGCCTGTAGTTCAACACCATTTAGTTACTGTTGGTGCAAATGCTATTAAGCAGCCTAGGTTGTGCAATAATCGTATAGACGACAGTATGGAGCCCAGCCACAAGAAACACAAGAAAGAGAAGATTAGTGTTGGCGCTGAAGGATTGGAAACCCCTCAAAATCTCAAGGGCAATGATTCTGAAAACCAGAGATCAGATGCTTTATTTCAATCAAATAAAGCAGTTAGACTTGCGTCAAAGCGAAATCATGATTTTGAAGCAGGAAATAAAGGTGATCTGAGAACACTAGAAAAGAGGGACGGAAAAGTAGAACCATCCCATCCTGGTGCTGATCCTTTACGAGTTTCTATTAAGGCAGGAGATTCCCATCAGCTTAATGCTGATGCCCCCCGTGATAATGTGGTAGTGTCTAAAAGAACACCTGACCGATCTAGAGATGTTAATGCTTCAAATATCAACAGAACGAAATCCTCTAATCAGACCGCTAGTGATACATTGAAAGATGCCAAGAAACTCAGAGACGAAGCAGATCACTTGAAGAACTCTGGATTCACTTTTGAAAGTAACGAGCTTTACTTCCAATCTGCTCTGAAGTATCTACATGGAGCATTCCTTCTAGAGACTCTTGATAATACAAGTGGCAAGCCTGGTGATATTTCTCCCATACGATTGTATAGCACTACAGCCGAATTGTGCGAGTCCTGCGCTCTTGAATATGAACGTCGCCAAGAAATGGCTGCAGCATCTTTGGCATTTAAATGTATTGAAGTAGCTTACTTGAGGATAGTTTACCATAAACATTCAAGCATCAATGGAGACCGACTAGAGATGAACTCATTTCGTTCAATTGTGCAAGGCGAGTCTCCATCTTCTTCTGCATCAGATGTTGATAACTTAAGCAACCACGGAGCTATGGATAAGGCTACTTTCGACAGAGGTAGTTCCCTCGGTGCTCGAAGTCAGATCTGGAATGCTGGAACCTGCACAAGTTTTGCTCGGGTCCTCAATTTTGCTCGTGATATGAATTCAGCCATGGAGGCCTCAAAAAATTCTCGAAACGCATTTGTGGCAGCCAGTTCATGTGCTAGTGAAGGAAAGCATGTGGACTACGTTGCATCAGTTAAAAAAGTGATTGATTTCAGCTTCCAAGACATTGGTGAACTCGTACAGTTGGTTCGGGTTGCTACACAGATGATAACTCACTCGGGTTTTTGCAGTGGTAGAGATTAG 4020 41.77 MVGSVEPMMMGDCIEMEEGEASCYHKDNGGDIDPDINLSYIDEKIERFLGHFQKDFEGGVSAEKLGAKYGGYGSFLPTYERPSSILPHNLNQQRDCNAAPPPVNFPLEGSSQNPKAPPTKRPEAFVCNTISSRNTREMSGSISGRVESCLPATKVTNSCPSKGEASGRLGSPMNSGSLKFRIKVGSDSVGLKNAAIYSGLGLEDSPLSSSLNSSDLSEGMLPLSQGPPDESPSKIIQAMTSFPVPHGALISPLHDSLLCLSRKEKPLPLPKPVPSLENKKDGLAKLANETTLKQNDSTLVKKKKKEVVHREKQVNLKNEVHASRGEEKNTLTLKRKLDNEAFESKEFLPNKLQCKPGLEGTKSSAYLDSQKKLSHKATLHEAVKQKALIKKEKPEIVGEKKFKVVQTAGGKIAGTIEGGFKVRSEASRGRKNTDSDTPESENRRHRLKLHSNEKVGANNVDSFNSSGLDVNRISKDATERASVDFQKVKGLDDSGIKMSKCSKVVEPAGVAPMDEWVCCDICQKWRLLPFGTKPDQLPDKWLCSMLDWLPGMNRCDISEEETTEKLYALYQLPLPQSGNAFQNHANGLISADTSNQGKKNETLREIQNPVCRIDQTHGKSSLKDQQLELRKNKSLNGLSNPPNKLRNSMNQSSSDLNNLGEAKNRGKLKEKSTDRVNCDQLKRKNKRPEEMRSVDNHQNFNMDVGKLGGSSNSGLSNMEGGEGLLKQGDIGSKKHNKLNMENKMQISLKKRGGTTEISSVVRSSVNQPSGKSALTKKRKLNDWQDDQNSPNSGVHESVPLKEENCEKLRKRKKLDVSNNFTDGMEEISKDKEAKMQMKKIIAKQTSVRKELTKRNLVARQVSAAANSSSSNVSQSHLTKAVVKVSPAESVSSSPMRSSGLDQFGGEKEEITSNIHPSSHALNTNSKKIKASPVVQHHLVTVGANAIKQPRLCNNRIDDSMEPSHKKHKKEKISVGAEGLETPQNLKGNDSENQRSDALFQSNKAVRLASKRNHDFEAGNKGDLRTLEKRDGKVEPSHPGADPLRVSIKAGDSHQLNADAPRDNVVVSKRTPDRSRDVNASNINRTKSSNQTASDTLKDAKKLRDEADHLKNSGFTFESNELYFQSALKYLHGAFLLETLDNTSGKPGDISPIRLYSTTAELCESCALEYERRQEMAAASLAFKCIEVAYLRIVYHKHSSINGDRLEMNSFRSIVQGESPSSSASDVDNLSNHGAMDKATFDRGSSLGARSQIWNAGTCTSFARVLNFARDMNSAMEASKNSRNAFVAASSCASEGKHVDYVASVKKVIDFSFQDIGELVQLVRVATQMITHSGFCSGRD 1339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 27873923 27880582 + MELO3C021346.2.1 Cme11g01992 342655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g01992 1339 MobiDBLite consensus disorder prediction 206 230 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 759 804 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 1009 1037 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 206 220 - -
Cme11g01992 1339 ProSiteProfiles Zinc finger CW-type profile. 510 563 IPR011124 GO:0008270
Cme11g01992 1339 Gene3D - 502 565 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 957 975 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 886 906 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 91 122 - -
Cme11g01992 1339 PANTHER CW-TYPE ZINC FINGER 364 1333 - -
Cme11g01992 1339 PANTHER CW-TYPE ZINC-FINGER PROTEIN 364 1333 - -
Cme11g01992 1339 PANTHER CW-TYPE ZINC-FINGER PROTEIN 9 355 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 1009 1095 - -
Cme11g01992 1339 PANTHER CW-TYPE ZINC FINGER 9 355 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 954 994 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 1076 1095 - -
Cme11g01992 1339 Pfam CW-type Zinc Finger 515 561 IPR011124 GO:0008270
Cme11g01992 1339 MobiDBLite consensus disorder prediction 613 690 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 759 774 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 631 660 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 662 690 - -
Cme11g01992 1339 MobiDBLite consensus disorder prediction 423 449 - -
Cme11g01992 1339 Coils Coil 1092 1112 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g01992 - - - csv:101222407 2395.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02353 Cme-Chr1:31880823 Cme11g01992 Cme-Chr11:27873923 2.73E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g330 . . . . . . . Bma05g01045 Cmo08g01190 Cmo17g00302 . . . . . . . . . . . . . . Cla06g00492 Cam06g0529 Cec06g0529 Cco06g0533 Clacu06g0513 Cmu06g0515 Cre06g1286 . . Cone7ag0159 Cone4ag0157 . . Chy11g01485 . . . . . . . . . Sed09g1215 . . Cma08g01217 Cma17g00314 Car08g01090 Car17g00288 Cpe12g00266 Cpe17g00012 Bhi12g02083 Tan06g0860 Cmetu01g0223 Lac12g2393 Hepe03g0115 . Lcy13g0188 . . . . . . . Lsi09g01415 . . Cme11g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003760 1 2 1 2 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 2 3 1 1 2 3 2 46