Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02016 ATGGCAGAGAAAGAGAATCTCTTTAAGCTAGTTCCTCGTTACAATCAGACTAACTCTGAATTGAACAGCTACCTTACTAAAATCACAAAGTGCCTTCGCGATCCTTGTGAACTTGTCAGAAGACACACATTCATACTTCTATCCAGATTACTACAGAGAGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCGGAGAAGATTCGTCAACTAGCAGATTACCTTTTTGGTAACATTTTAAAAGTGAAGGCCCCACTTTTGGCTTACAACAGTTTCGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGTGATTCGAAGGCATCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGTCCAGGAGAATGCACATTTATGTTTCTCTTCTGAAACAAATGGCTCCCGAGCATCTTCTGGCTACCTTTGCAAAGTTATGTGCAGAAGTTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATGCCACTGCACGTTCTGTTTTACAGAATCTCATTAGTTTCCCATGGCTGAAAGCGCAGGATACCTTTGATATTCTTGCTTGTAAAGAGATTCGACTATCAATAAATCGAGTATCATCATCAGAATCTGGTGATGTAGATGAGGAAGGGGGCGAGAGTGGAGGAGCGTCTGCTGCTAGAGGAAAGGTCATCACTCACGCAGTGAGAAAGAGTCTCATACAAAACACCATACCCATCTTCATTGAGTTAAAAAGACTAATGGAAAGCAAGAATAGCCCCCTTATAGGTTCACTCATGGAATGCCTTCGAGTTCTTCTCAAGGACTACAAGAACGAAATTGATGACTTATTGGTAGCTGATAAGCAACTTCAGAAAGAGCTCCTCTATGACATTCAAAAATATGAATCTACCAAAGCCAAGTCAGCCGTTGCCGAGGCAGTCAACGAGATGCACAAGTCAACTAACTATCTTTCTCCTGAGGCTCCTCCTCAAGCTGGAAGCATTATTAACAACCTAACCTCAAAACTTCAAAATGATTCGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGAGAAGTGAACAGAGGGACTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGGCACAAATACCTCACGTTTGAATGTGATTGAATCTTTGAGAAAACACCAAAACCATGGTGGCCTTAAAGGTAGGAGTTCAACTATTGTTTCTGCATCTGGTTCATCTGGA 1338 42.15 MAEKENLFKLVPRYNQTNSELNSYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADYLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSKASRAESRLFSIRGNDERSRSRRMHIYVSLLKQMAPEHLLATFAKLCAEVLVAASDGMLNIDDATARSVLQNLISFPWLKAQDTFDILACKEIRLSINRVSSSESGDVDEEGGESGGASAARGKVITHAVRKSLIQNTIPIFIELKRLMESKNSPLIGSLMECLRVLLKDYKNEIDDLLVADKQLQKELLYDIQKYESTKAKSAVAEAVNEMHKSTNYLSPEAPPQAGSIINNLTSKLQNDSKVASAIADAAAAATAKSVLREVNRGTSTPPLGSLSLPKLKSRTGGNNGTNTSRLNVIESLRKHQNHGGLKGRSSTIVSASGSSG 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28034031 28036360 - MELO3C035190.2.1 Cme11g02016 342679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02016 446 PANTHER CONDENSIN-2 COMPLEX SUBUNIT D3 22 422 - -
Cme11g02016 446 MobiDBLite consensus disorder prediction 383 446 - -
Cme11g02016 446 PANTHER CONDENSIN 22 422 IPR026971 GO:0007076
Cme11g02016 446 SUPERFAMILY ARM repeat 9 361 IPR016024 -
Cme11g02016 446 MobiDBLite consensus disorder prediction 431 446 - -
Cme11g02016 446 MobiDBLite consensus disorder prediction 383 420 - -
Cme11g02016 446 Coils Coil 281 308 - -
Cme11g02016 446 Pfam non-SMC mitotic condensation complex subunit 1 21 179 IPR032682 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02016 K11491 NCAPD3; condensin-2 complex subunit D3 - qsu:111988474 516.538
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029079 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 2