Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02020 ATGCCAGGTCCCGCCTTAGAGATGGAGCCAGTTGAACCACAGTCATTGAAGAAGCTTAGCTTCAAATCTCTCAAAAGAGCCCTAGACCTTTTCTCTCCGGTCCACGGCCATGTCGCTCCTCTCGATCCCGAAAGCAAAAAAATTCGTATCAGTCATAAGATAAGTGTTGAGTACGGAGGAATGAAGAACATCGGTACTAAGCCTACTGGCCAGGCAAGTTCCGCTCCCGATAGTGCTATTGGAACTCCAGCGCCTTCCAATGCTCTCGCACTTCCTGGTCCGACTGATTCTAGGGATGTGAAGTCTGGGGCACAAAATGCAGTGGTTATTGGTCCAACCGTGCAGCCAAACACACAAAATGACGCTGGTCTTCAGGGAAGAAGCTCAGCTATTGTTTCGGCATCTGGTTCATCTGAAAGGATGTCTACTTCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCCACGTCCGGTTTGGCATGCTCCATGGAGAAATTATAGGGTCATAAGTGGTCACTTAGGGTGGGTAAGATCAGTTGCATTTGATCCCAGTAACACATGGTTTTGTACGGGTTCAGCAGATCGTACAATCAAGATTTGGGATGTTGCAAGTGGAAAGTTAAAACTCACATTGACAGGCCACATTGAGCAAGTACGAGGTCTTGCTGTCAGCAACAGGCATACCTACATGTTTTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACTTGGAACAGAATAAGGTCATTCGTCATTACCATGGTCATCTGAGTGGTGTTTACTGTTTGGCTCTTCATCCAACAATAGATGTTTTGCTTACTGGAGGACGTGATTCTGTCTGCCGGGTGTGGGACATTCGAAGTAAGATGCAAATTCATGCGCTCTCTGGACATGATAACACAGTTTGCTCAGTTTTTACTCGACCTACGGACCCACAAGTTGTGACTGGCTCCCATGACACAACTATCAAGTTTTGGGACCTCAGATATGGAAAGACCATGACAACACTGACATACCATAAGAAATCTGTTCGGGCGATGGCATTGCATCCTAAAGAACACAGTTTTGCATCTGCCTCAGCTGACAACATCAAGAAATTTAACCTCCCTAGAGGGGAGTTTGTGCACAATATGCTTTCTCAGCAGAAGACTATAATAAATGCAATGGCTGTCAATGAGGAGGGTGTTATGGTGACTGGAGGTGACAATGGTAGCTTATGGTTCTGGGATTGGAAGAGTGGTCATAACTTTCAGCAATCCCAAACAATTGTACAACCTGGGTCGTTGGATAGCGAAGCTGGTATCTATGCCCTTTCTTATGACATAACTGGTTCAAGGCTCGTAACTTGTGAAGCTGACAAAACGATTAAAATGTGGAAAGAGGATGAAAATGCTACCCCCGAAACTCATCCTCTCAACTTCAAGCCACCCAAAGATATCCGAAGATTTTAG 1452 45.39 MPGPALEMEPVEPQSLKKLSFKSLKRALDLFSPVHGHVAPLDPESKKIRISHKISVEYGGMKNIGTKPTGQASSAPDSAIGTPAPSNALALPGPTDSRDVKSGAQNAVVIGPTVQPNTQNDAGLQGRSSAIVSASGSSERMSTSAIMERIPSKWPRPVWHAPWRNYRVISGHLGWVRSVAFDPSNTWFCTGSADRTIKIWDVASGKLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRHYHGHLSGVYCLALHPTIDVLLTGGRDSVCRVWDIRSKMQIHALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMTTLTYHKKSVRAMALHPKEHSFASASADNIKKFNLPRGEFVHNMLSQQKTIINAMAVNEEGVMVTGGDNGSLWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALSYDITGSRLVTCEADKTIKMWKEDENATPETHPLNFKPPKDIRRF 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28053151 28059976 - MELO3C021320.2.1 Cme11g02020 342683

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Cme11g02020 483 MobiDBLite consensus disorder prediction 66 81 - -
Cme11g02020 483 MobiDBLite consensus disorder prediction 462 483 - -
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 169 206 - -
Cme11g02020 483 PRINTS G protein beta WD-40 repeat signature 188 202 IPR020472 -
Cme11g02020 483 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Cme11g02020 483 PRINTS G protein beta WD-40 repeat signature 314 328 IPR020472 -
Cme11g02020 483 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Cme11g02020 483 Pfam WD domain, G-beta repeat 164 201 IPR001680 GO:0005515
Cme11g02020 483 Pfam WD domain, G-beta repeat 292 327 IPR001680 GO:0005515
Cme11g02020 483 Pfam WD domain, G-beta repeat 206 243 IPR001680 GO:0005515
Cme11g02020 483 PANTHER BNAA01G27690D PROTEIN 10 483 - -
Cme11g02020 483 SUPERFAMILY WD40 repeat-like 158 460 IPR036322 GO:0005515
Cme11g02020 483 SMART WD40_4 162 201 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 288 327 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 246 285 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 204 243 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 422 460 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 371 410 IPR001680 GO:0005515
Cme11g02020 483 SMART WD40_4 330 368 IPR001680 GO:0005515
Cme11g02020 483 MobiDBLite consensus disorder prediction 61 101 - -
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 211 248 - -
Cme11g02020 483 CDD WD40 165 460 - -
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 210 IPR001680 GO:0005515
Cme11g02020 483 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 10 483 IPR045241 GO:0000398
Cme11g02020 483 ProSitePatterns Trp-Asp (WD) repeats signature. 314 328 IPR019775 -
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 252 IPR001680 GO:0005515
Cme11g02020 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 329 - -
Cme11g02020 483 Gene3D - 149 483 IPR015943 GO:0005515
Cme11g02020 483 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02020 K12862 PLRG1, PRL1, PRP46; pleiotropic regulator 1 - csv:101221493 948.347
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01612 Cme-Chr7:21910119 Cme11g02020 Cme-Chr11:28053151 7.15E-06 dispersed
Cme08g00876 Cme-Chr8:5776573 Cme11g02020 Cme-Chr11:28053151 3.02E-30 dispersed
Cme10g01609 Cme-Chr10:21336689 Cme11g02020 Cme-Chr11:28053151 4.88E-07 dispersed
Cme11g02020 Cme-Chr11:28053151 Cme12g01390 Cme-Chr12:21793145 2.58E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g184 Blo01g00070 . . Bda08g00378 . . . Bma05g01031 . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag0763 . . . . . . . . . . Bpe05g00831 . . . . . . . . . Car17g00306 . . . . . . . . . . . . . . . . Lsi09g01434 . . Cme11g02020
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008619 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 2 1 1 3 1 35