Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02031 ATGTCAAATGGATTTGCCAACGCCGAAGGTGATAAAAAGAAGAAAAAGATCGCCATTATTAGTGTGTCTTCTTTAATCCTCGTAGCAATGGTTGTCGCCGTTACCGTTGGCATCAACAATGCACCTTACGAAGAGCATGGTGAGGGCGATCAAGGAAGCAAAACCACCCCTGAAATCTCATCATCTACCAAAGCTATCCAAGCCATTTGTCAACCAACGGATTACAAAGAAACATGTGAGAAGAGTCTAATGGCAGAAGCGGGTAACACGACAGACCCAAAAGAGTTGGTGAAAGTGGGCTTCAAAATCGCCACAAGGAGTCTGAACGAGGCCATTAGGAATTCGACCACGCTTCAAGAATTATCCAAAGACCCCAGAACCAACCAAGCTCTTCAAAATTGTCGTGAGCTACTAGAATATGCCATTGATGATTTGAACGAGTCGTTTGAAAGAATCGGCACCTTCCAAATGTCCAAACTCGATGAATTCGTCGCGGATTTAAAGATTTGGCTCAGTGGTGCACTCACGTACGAACAAACTTGCTTGGATGGTTTTGAAAACACTACAGGTGATGCTGGTACGAGAATGCAAGAGTTTCTGAAGTCAGCTCAGGAAATGACAACCAATGGCCTTGGCATTGTTAACGAATTGTCTACCATTTTGGGTTCACTTCAGATTCCTGGAATGACTGGACGACGACTTTTGGAAGATGATGATCATGAAATGCCATCATGGATTAGCGACGGAAAGAGACGATTGATGCAGGCGGGAGCTGCGGGGATGAAACCCGATTTGATTGTAGCTCAAGATGGGAGTGGGAAATACAAAACCATAAATGCAGCTTTGGCTGATGTGCCTTTGAAGAGTAATAAAACGTTTGTGATTTATGTGAAGGCCGGAATTTACAAAGAAATCGTTGTCATCCCCAAACATATGACTCATCTTACAATGTACGGTGATGGTCCAACCAAAACTGTCGTCACTGGTAGCTTAAACTTCATCGATGCTGCAATTGGAGCTAACTTCTACGCTAGAGATATGGGATTCGAGAACACGGCTGGATCAGCAAAGCACCAGGCCGTGGCCCTACGAGTCCAATCCGACAGATCAATCTTCTACAACTGCCAAATCGACGGATACCAAGACACCCTCTACGCACACGCTCATCGTCAGTTCTACAGAGATTGCACAATCAGTGGCACCATCGACTTCGTCTTCGGAAACGCTGCTACAAATTTCCAGAACTGCAAGCTAGTGGTGCGAAAGCCAATGGATAACCAACAATGCATCGTAACAGCTCACGGGCGTATGAACCGCAAGGAACCAACGGCATTGATCTTCCAGGGCTGCCATTTCATGGGTGATCCAGCTTACTTGCCATTCAAGAGCATCAACAAGGCTTATTTGGGACGTCCATGGAAGCAATATTCAAGAACCATTATAATCGGATCACAAATAGACGATATAATCCAGCCAGAAGGATGGTTGCCATGGATGGGAGATTTTGGATTGAACACCTTGTTCTACGCGGAGGTACAAAACAAAGGACCAGGGGCTGTTGAAACTAAGAGAGTGAAGTGGAGAGGAATTAAACATATTACGCCACAACATGCTGCAGATTTCACTCCAAGACGATTCATTGATGGCGATGCATGGATTCCTGCTAAGGGAATTCCTTACTCTTCTGGCATGATGTAA 1698 45.05 MSNGFANAEGDKKKKKIAIISVSSLILVAMVVAVTVGINNAPYEEHGEGDQGSKTTPEISSSTKAIQAICQPTDYKETCEKSLMAEAGNTTDPKELVKVGFKIATRSLNEAIRNSTTLQELSKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVADLKIWLSGALTYEQTCLDGFENTTGDAGTRMQEFLKSAQEMTTNGLGIVNELSTILGSLQIPGMTGRRLLEDDDHEMPSWISDGKRRLMQAGAAGMKPDLIVAQDGSGKYKTINAALADVPLKSNKTFVIYVKAGIYKEIVVIPKHMTHLTMYGDGPTKTVVTGSLNFIDAAIGANFYARDMGFENTAGSAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATNFQNCKLVVRKPMDNQQCIVTAHGRMNRKEPTALIFQGCHFMGDPAYLPFKSINKAYLGRPWKQYSRTIIIGSQIDDIIQPEGWLPWMGDFGLNTLFYAEVQNKGPGAVETKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28124390 28126396 - MELO3C021311.2.1 Cme11g02031 342694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02031 565 SUPERFAMILY Pectin lyase-like 260 563 IPR011050 -
Cme11g02031 565 Pfam Plant invertase/pectin methylesterase inhibitor 65 212 IPR006501 GO:0004857
Cme11g02031 565 PANTHER PECTINESTERASE 17 564 - -
Cme11g02031 565 ProSitePatterns Pectinesterase signature 1. 289 308 IPR018040 -
Cme11g02031 565 CDD PMEI-like_3 68 219 - -
Cme11g02031 565 PANTHER PECTINESTERASE 17 564 - -
Cme11g02031 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 64 217 IPR035513 -
Cme11g02031 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 60 218 IPR035513 -
Cme11g02031 565 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Cme11g02031 565 Gene3D - 258 564 IPR012334 -
Cme11g02031 565 Pfam Pectinesterase 264 550 IPR000070 GO:0030599|GO:0042545
Cme11g02031 565 SMART PMEI_2 61 213 IPR006501 GO:0004857
Cme11g02031 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 61 217 IPR006501 GO:0004857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00752 Cme11g02031 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00063 Cme-Chr2:557265 Cme11g02031 Cme-Chr11:28124390 0 dispersed
Cme10g01634 Cme-Chr10:22079261 Cme11g02031 Cme-Chr11:28124390 2.71E-166 dispersed
Cme11g02031 Cme-Chr11:28124390 Cme12g01093 Cme-Chr12:18847758 5.82E-132 dispersed
Cme12g02011 Cme-Chr12:25724146 Cme11g02031 Cme-Chr11:28124390 4.80E-18 dispersed
Cme11g02031 Cme-Chr11:28124390 Cme06g00752 Cme-Chr6:4959491 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02031 K01051 - csv:101221958 1054.28