Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g02045 | ATGGTGGTTTTTCCGGAAGTTATCGAGGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAACAACAACAATAATAATGAAGACGATGGGAGCAAAGAAAAAATAGGTAAAGAGGGAAAAAAGAACAAATCCATGATTTGTTTATCTGGAAGTTTTAAAACCAGCAAGTTTGAAGATATGGCTTCTGTTTGCTCCAAGAGAGGAAATAAAGGAATTAATCAAGATTCTCTTGTTCTTTGGGAGGATTTTGGTTGCCAGGCAGATGTGGTATTATGTGGGATGTTTGATGGGCATGGGCCTTGGGGTCACATGATTAGCAAACAAGTCAGAAAATCATTACCTTCTCAATTACTCACCAATATTCAAAAAAACCTTTCCATGCAAACCGACCAAACCCATCTCTTTCCTTTCAACCTGTGGAAGCAATCTTGCTTAAAAACTTATGCCGCTATTGATGAAGAGCTCAAGCAACACCCTCGTATTGATTCCTTTTATAGTGGCACCACTGCCTTAACCGTCGTTAAACAGGGTCGACATCTTGTTGTTGCAAATGCTGGTGATTCACGAGCTGTCTTAGCAGTAACTTCCGATGATGGGTGCTTGAAACCAGTTCAGCTCTCAGTTGATTTCAGACCTAATTTGCCTGAGGAGGCTGAAAGAATAAAGCAATCAAAAGGGAAAGTGTTGTGTTTAAAGGACGAACCTGGGGTTTATAGAGTATGGACTCCTGACTCTGGGACGCCAGGTTTGGCTATTTCAAGAGCTTTTGGGGACTACTGTTCCAAGCAATACGGCCTCATTTCTGTGCCCGATGTCAGCCACCGAGTCATTACCATGGAGGATCAGTTTGTCATTGTCGCCACCGATGGGGTGTGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTACAACACCAAATAGGGAAATGTCGGCCAAAAGACTAGTGGATTGTGCTGCACGTGCGTGGAAATCAAAGAAACGAGGATTCGCAAGGGACGACATGTCGGCCATTTGCCTCTTTTTTCATGCCGCGCACACAAAATGA | 1056 | 42.71 | MVVFPEVIEEMVRNMSIKKKNNNNNNNEDDGSKEKIGKEGKKNKSMICLSGSFKTSKFEDMASVCSKRGNKGINQDSLVLWEDFGCQADVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNIQKNLSMQTDQTHLFPFNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALTVVKQGRHLVVANAGDSRAVLAVTSDDGCLKPVQLSVDFRPNLPEEAERIKQSKGKVLCLKDEPGVYRVWTPDSGTPGLAISRAFGDYCSKQYGLISVPDVSHRVITMEDQFVIVATDGVWDVMSNQEAVHIVSTTPNREMSAKRLVDCAARAWKSKKRGFARDDMSAICLFFHAAHTK | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 28213585 | 28218684 | - | MELO3C021300.2.1 | Cme11g02045 | 342708 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g02045 | 351 | Pfam | Protein phosphatase 2C | 69 | 322 | IPR001932 | - | |
| Cme11g02045 | 351 | PANTHER | ALPHABET, ISOFORM E-RELATED | 1 | 350 | - | - | |
| Cme11g02045 | 351 | CDD | PP2Cc | 61 | 345 | IPR001932 | - | |
| Cme11g02045 | 351 | MobiDBLite | consensus disorder prediction | 16 | 39 | - | - | |
| Cme11g02045 | 351 | Gene3D | - | 51 | 348 | IPR036457 | - | |
| Cme11g02045 | 351 | SUPERFAMILY | PP2C-like | 62 | 346 | IPR036457 | - | |
| Cme11g02045 | 351 | SMART | PP2C_4 | 52 | 343 | IPR001932 | - | |
| Cme11g02045 | 351 | MobiDBLite | consensus disorder prediction | 23 | 39 | - | - | |
| Cme11g02045 | 351 | ProSiteProfiles | PPM-type phosphatase domain profile. | 61 | 345 | IPR001932 | - | |
| Cme11g02045 | 351 | PANTHER | PROTEIN PHOSPHATASE 2C 41-RELATED | 1 | 350 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g00044 | Cme-Chr2:416182 | Cme11g02045 | Cme-Chr11:28213585 | 7.79E-126 | dispersed | |
| Cme07g00239 | Cme-Chr7:1546464 | Cme11g02045 | Cme-Chr11:28213585 | 1.88E-89 | dispersed | |
| Cme08g02161 | Cme-Chr8:27634172 | Cme11g02045 | Cme-Chr11:28213585 | 8.90E-93 | dispersed | |
| Cme11g02045 | Cme-Chr11:28213585 | Cme05g01581 | Cme-Chr5:25027632 | 4.05E-148 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g02045 | - | - | csv:101214034 | 656.751 |