Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02046 ATGGGATCGGAGCAGTTGATGGCCGGAGGCGGGCCTCGATATGTTCAAATGCAATCGGAGCAGCCCACGGCTTCGATGTCTTCGTTTTTTTCTTTTCATCAGGATGCTCCTGAGCCTACAAGGATTTTCGATGAGTTGCCCAAGGCTACAATCATTTCTGTCTCTCGTCCTGATGCCGGTGATATCAGTCCTATGCTTCTTTCTTACACAATCGAGTGCCAGTATAAGCAGTTTAAATGGCGCATGTTGAAGAAAGCTTCCCATGTATTTTACTTGCATTTTGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAGCAGTACCCCAAGATGAGGATGGACCAGATGATGAGGCCGAGCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGACTGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAACATGGATATTGTCAACTCTCGGGAGGTTTGCAGGTTCTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATATGGCCCAAAGTTGAAAGAGGATTATGTCATGGTGAAGCATCTACCTAAAATTCCAAAGCAAGATGACTCTAGGAAATGTTGTTTATGCCCATGGTTTAGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAGCCTGGGTTTTTGGCATTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCTGATGGCAATGGAGATGGACGACTATCTTTGGCTAAGGAAATTAGGGAGCCAAATCCGTTACGACATTCATTTAAGGTAGCATGTGGAAATAGGAGTATTAGGATAAGAGCGAAGACTGGATCGAAGGTTAAAGATTGGGTTGCTGCAATTAATGATGCTGGACTGAGACCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGTTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGCAAGGCTCAATGGTTCATCGATGGCCAAGCAGCTTTTGAAGCGATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGCGGCGTCCTTTTGTTTCGAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTCCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGTAAGAGAAAACTTCTCAGCATCCATGAGAATGTGAGAGTATTGCGCTACCCTGACCATTTCTCCTGTGGTGTGTACTTATGGTCACACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGATACACCTGAACATAAAGTTGGTGATTGCCCTCCTTCAGTGTGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGGAAGAAATATCCTCGCATGCCTTGGCATGATGTCCACTGTGCACTCTGGGGACCACCTTGTCGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAATGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACGACCCTAGAGAAACAACAGTACAGGATTCATTTTCTCGAGGATCATCTTTCCATGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAACTAAATGGACTGGAACCAATTGTCAATCCCCTCGATCAGCCAAGTAGGGTCAGCAGCGGTCTCCCTTTTTCTTTCAGGAAGACCAAAGTTGAACCCATAGGACAAGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCTCATGGAAAGTTTTCTGGAGATGGGAAAACACATAATCGTATCAAAAGTTCAGATTTTGAGTGGTGGGAAACACAAGACAGGGGAGATCATGGTGGCTTCGCAGATGAATCTGGACAAGTTGGTCCACGTGCTTCATGTCGTTGCCAGGTCATCAGAAGCGTCAGTCAGTGGTCTGCTGGGACAAGCCAAGATGAAGAAAGCATTCACACTGCATATTGTTCTCTTATTGAGAAGGCAGAACATTTTATCTACATTGAGAATCAATTTTTTATATCAGGTCTCTCAGATGATGTTTCAATAAGGAACCGTGTGTTAGACGCATTATACCGCCGAATAATGAGAGCCTTCCGTGAAAAGAAGATTTTTAGGGTCATTGTTGTCATACCACTCTTGCCTGGATTTCAGGGGGGCCTGGATGACAGTGGTGCAGCATCTGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGCCGAGGACCGAATTCAATATTGCATAATCTTTATGAGCTTCTTGGTTCTAAATTTCATGATTATATATCGTTTTATGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATCGACGATTGTATTGCTTTGATTGGTTCGGCTAATATCAACGACAGAAGTTTACTCGGTGCTAGGGATTCTGAGATTGCAGTTGTTATTGAAGATAACGAACTCATCAATTCATCTATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTATCTCTCTTTGGTCTGAACATCTTGGTCTTCGTCCCGGACAGGTCAATCAAATAGTTGATCCAGTTGTTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACGATATACCAAGATGTTTTTTCTTGCATACCAAACGACCTCATAAATTCCAGAGCTGGGCTGAGACAGAGCGTTGCGATCTGGAAAGAGCGACTGGGACACACTACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTCTATAGGAATGGAGAAATCGAAAGGATTGATCCAATGGAGAGATTAAGTTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTTGAATTCCTCAGCAAAGAAGATCTAAGACCTGTGTTCAATCAGAGTGAGTATTATGCATCTCTAGTATTTCATTAA 3342 42.73 MGSEQLMAGGGPRYVQMQSEQPTASMSSFFSFHQDAPEPTRIFDELPKATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTAVPQDEDGPDDEAEPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKTAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKQDDSRKCCLCPWFSCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRLSLAKEIREPNPLRHSFKVACGNRSIRIRAKTGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGQAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLSIHENVRVLRYPDHFSCGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDDPRETTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLEPIVNPLDQPSRVSSGLPFSFRKTKVEPIGQDMPLKGFVDDLDHLDSHGKFSGDGKTHNRIKSSDFEWWETQDRGDHGGFADESGQVGPRASCRCQVIRSVSQWSAGTSQDEESIHTAYCSLIEKAEHFIYIENQFFISGLSDDVSIRNRVLDALYRRIMRAFREKKIFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGPNSILHNLYELLGSKFHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGARDSEIAVVIEDNELINSSMGGQPWKAGKFCWSLRISLWSEHLGLRPGQVNQIVDPVVDSTYKDTWMATAKTNTTIYQDVFSCIPNDLINSRAGLRQSVAIWKERLGHTTIDLGIAPEKLEFYRNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNQSEYYASLVFH 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28223054 28235732 - MELO3C021299.2.1 Cme11g02046 342709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02046 1113 Gene3D Endonuclease Chain A 363 602 - -
Cme11g02046 1113 Coils Coil 98 118 - -
Cme11g02046 1113 Pfam Phospholipase D Active site motif 477 504 IPR001736 GO:0003824
Cme11g02046 1113 CDD PLDc_vPLD1_2_yPLD_like_2 770 954 - -
Cme11g02046 1113 Gene3D - 245 342 IPR011993 -
Cme11g02046 1113 Pfam PLD-like domain 783 956 IPR025202 -
Cme11g02046 1113 SUPERFAMILY PH domain-like 249 340 - -
Cme11g02046 1113 MobiDBLite consensus disorder prediction 124 153 - -
Cme11g02046 1113 PANTHER PHOSPHOLIPASE 29 1110 - -
Cme11g02046 1113 SMART PH_update 216 344 IPR001849 -
Cme11g02046 1113 CDD PH_PLD 193 340 - -
Cme11g02046 1113 SUPERFAMILY Phospholipase D/nuclease 321 596 - -
Cme11g02046 1113 PANTHER PHOSPHOLIPASE D 29 1110 IPR015679 -
Cme11g02046 1113 SUPERFAMILY Phospholipase D/nuclease 750 955 - -
Cme11g02046 1113 SMART pld_4 910 937 IPR001736 GO:0003824
Cme11g02046 1113 SMART pld_4 477 504 IPR001736 GO:0003824
Cme11g02046 1113 PIRSF PLD_euk 17 636 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cme11g02046 1113 PIRSF PLD_euk 615 1113 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cme11g02046 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 910 937 IPR001736 GO:0003824
Cme11g02046 1113 CDD PLDc_vPLD1_2_yPLD_like_1 370 515 - -
Cme11g02046 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 477 504 IPR001736 GO:0003824
Cme11g02046 1113 Gene3D Endonuclease Chain A 738 966 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01583 Cme-Chr5:25048067 Cme11g02046 Cme-Chr11:28223054 0 dispersed
Cme11g02046 Cme-Chr11:28223054 Cme11g02535 Cme-Chr11:31792866 1.19E-16 dispersed
Cme11g02046 Cme-Chr11:28223054 Cme07g02065 Cme-Chr7:25517572 1.37E-12 transposed
Cme11g02046 Cme-Chr11:28223054 Cme03g01617 Cme-Chr3:25062581 2.87E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02046 K01115 - csv:101211856 2282.29