Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02055 ATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAAGGAGTGATTCATGGTGCTTGTGATTACCTTATCAAACCTGTTCGGATTGAAGCACTCAGGAACATATGGCAACATGTAGTTCGGAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGAGGGAGATCGAGAGCAAAATCTGTCTGAAGGTGCAAATTATTCATCTTCGGCATATGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCAGAAGAAGAGCCCGAGGAGAGGGACGATACATCAACTTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTTGCCGCAGTTAATCAGCTAGGCATTGACAAAGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCAGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCTCCACATCAAAGTAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTTTGGATCAATGGGTTCATTCAATGGGATCGATCTTCAGACGCTTTCGGTCACTGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACAGGACTTCGTAGGCCTACCGCGAAATCTAGCATATCCATGGCCCTTGTTGATCAGAACAATATATTCAGCTTTGAAAATCCAAAATTGAGGTTTGTTGAGGACCAAACACAACACCTAAATAATAGTAAACCAGTAAACTTGTTTCATGAGATTCCAACAAAAATTGAGCCAAAGCAGCTTGGAAATATTCAGCACTCCTCTGTGCAGCCTCAGGGGAACATAAACATGCAACTCAATATCAAGAGCGAACATAGTGGAACTCAACTAATGCATTTGTCTCAACAACAAACTCTAGGCCACTCTCCTGCTAGCCACTTACCCAGAATTCCATCAACACTAAGGAAACCGATCATATCAGGTAGTGTTACAAGGGGAAATGGGACTACTGATAATAGCCACAGGCCTGGATACAACCTAGTTTCACCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACAGAATTGTCTAACAATTATTCTCTTCAGAGCAATTCATCTGTATCTACCTTGAACTGTAAAGGGGTGTTTCAAGAAGAGATTAGTTCAGATCTAAAAGTTTCGGGCGGACTAATGTCAAGTTATGATGTTTTTAGTGACTTGCCCCTGCAGAAATCCCATGACTGGGATTCTCAAAATGTTAACACCTTGGCCTTTGGTACTTTTCACCATGGGAACTTCATGCAGGATAGCTTTGATATCTCACCCTCCACTTTAATTCATCATGGTTTTCCTTCAAGCCAAATGAATGGACAAAATCAAAATTCATCAGTCGTTGGAAAGACTATGTTTTCCTTTTCGGATTTGACTCAACCCGAGAATCCTCAAAATATTGCCCAAAACTCGCTTCTCGATCCTGTGGAGGTCAAATCTCAGAAAATCCCCGATGCAAACTATCAAACTGACCTCTTATCCGATGACTTTGGCCAGGATGAACTTCTTGGTGTCTTTCTCAAACAACAGCAACAAGGAGACGATGGATCGGTCGACTTTAGCGGGTACCAAACAGAGAATATTTGTGTTTAG 1671 42.61 MSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDEGDREQNLSEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQSNLNNSFINPQDPPFGSMGSFNGIDLQTLSVTGQLSPQSLAALQATGLRRPTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHEIPTKIEPKQLGNIQHSSVQPQGNINMQLNIKSEHSGTQLMHLSQQQTLGHSPASHLPRIPSTLRKPIISGSVTRGNGTTDNSHRPGYNLVSPTSVMVNYPMSQTTELSNNYSLQSNSSVSTLNCKGVFQEEISSDLKVSGGLMSSYDVFSDLPLQKSHDWDSQNVNTLAFGTFHHGNFMQDSFDISPSTLIHHGFPSSQMNGQNQNSSVVGKTMFSFSDLTQPENPQNIAQNSLLDPVEVKSQKIPDANYQTDLLSDDFGQDELLGVFLKQQQQGDDGSVDFSGYQTENICV 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28293377 28298041 + MELO3C021290.2.1 Cme11g02055 342718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02055 556 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 159 IPR017930 -
Cme11g02055 556 MobiDBLite consensus disorder prediction 46 63 - -
Cme11g02055 556 Pfam Myb-like DNA-binding domain 105 155 IPR001005 -
Cme11g02055 556 MobiDBLite consensus disorder prediction 46 100 - -
Cme11g02055 556 SUPERFAMILY Homeodomain-like 100 160 IPR009057 -
Cme11g02055 556 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 103 156 IPR006447 GO:0003677
Cme11g02055 556 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Cme11g02055 556 SUPERFAMILY CheY-like 1 47 IPR011006 -
Cme11g02055 556 MobiDBLite consensus disorder prediction 64 79 - -
Cme11g02055 556 Gene3D - 100 162 - -
Cme11g02055 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 530 - -
Cme11g02055 556 MobiDBLite consensus disorder prediction 80 100 - -
Cme11g02055 556 MobiDBLite consensus disorder prediction 332 353 - -
Cme11g02055 556 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 530 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00108 Cme-Chr7:673597 Cme11g02055 Cme-Chr11:28293377 1.06E-60 dispersed
Cme11g02055 Cme-Chr11:28293377 Cme12g00152 Cme-Chr12:1499830 3.89E-24 dispersed
Cme11g02478 Cme-Chr11:31423033 Cme11g02055 Cme-Chr11:28293377 3.73E-24 dispersed
Cme01g02224 Cme-Chr1:30976438 Cme11g02055 Cme-Chr11:28293377 4.22E-10 wgd
Cme11g02055 Cme-Chr11:28293377 Cme06g00764 Cme-Chr6:5045134 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42238 PF00249 Myb_DNA-binding 5.10E-08 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02055 - K14491 csv:101210138 1040.41