Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02068 ATGTCTCTCTCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCAATACTGTGTAACTATAAATATTTCATCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGAATACATGTATACTATGCCCATGGCCTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGTTTCAGATGTCTCCATCCACGTCGTTGAACTCAAATTCAGGTTCTGTCTCTAACCCACCAACTCCGTGGCTTTTATCAGAGGAACTTGATTCCAAGGCTGCTCATGTTTATTCTATTGGTGAAAACGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAAACTTTCATCCTTCGACCAACAGAACCAAGTCCCAATAAACGCGACCAGCAATTTTGTGGGGGAGATGTCTTCATCTAGTAATCCAGTTGAGTCAACTGGGATGGCCAACGGCAATATCAGTTTCACTGGAAGTGCCAATCTGTTGTTACGTGGTCAAACAAATTTGAATGTGGAGAAGAGGGATTCCATTGCAATTAATTCTATGGACAATTTGTTAGATGAGAGACTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCATTGAGTCTCCTGGTTCAGTCATTGATCCCGCTATTGAACCATCCATTTCATCTGTTCACAATTCCTATCGTGATTCAACATTATATCACAGTCAAACTTTGGCTATGGAGCAAATTTTTAACATAACTGAAGTCTCACCTGCATGGGCCCTTTCAACAGAGAAAACAAAGATTCTAATTATTGGATATTTTCACAATGACTTTGTACATCTAGCAAAGTCCAACTTATTGGTTGTATGTGGTGATACCAGTGTTAATCTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACCACCACATTCACCTGGACTAGTACATTTATATGTGAGTGTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTGCACCAAATTTAGAAGTGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAAGAGTTTCAAATCCAGATGCGGCTTGCTCATATGTTATTCTCTACATCCAAGATTCTGAGCATGATGTCAACTAAATTGTCGCCCAGTGCCCTGCAGGAGGCTAAGAAACTTGCTATAAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCGTTTCAACAAGCAAGGGAAGGTGTTCTTGAGATCATGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGCTGCTGAAGGCTCAAAGAAAAGTACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCGATAAACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTTTATCAGCGGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCTAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATACTGGTAGTACAATAACTGATGCCTCTGATTGCATCAGCGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGCACAGCAGCTGATGCAGCAGCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAGCAAAGATCTGATAGAATTGAATTATCCTCCCCAGAAGCTGAGGCACGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTAAGGAGGCAGTATCGCAAGATTGTTTGGTCAGTAGGTGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTCCGTGGGCTTCAAGTTGCACCTACTGAAGTGGTGGAAAAGCAGGAAAGTGACGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAAAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGTAGGATGAGGTTAGCCTATGATGAAGCAGCGTTGGAATATGAAGTACTTTCGCATCCTGTTTATGGTAATCATTAA 2751 41.88 MSLSMKADVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFIIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQEFQMSPSTSLNSNSGSVSNPPTPWLLSEELDSKAAHVYSIGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAMPKGDKLSSFDQQNQVPINATSNFVGEMSSSSNPVESTGMANGNISFTGSANLLLRGQTNLNVEKRDSIAINSMDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISSVHNSYRDSTLYHSQTLAMEQIFNITEVSPAWALSTEKTKILIIGYFHNDFVHLAKSNLLVVCGDTSVNLDFVQPGVYRCLVPPHSPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQIQKWEEFQIQMRLAHMLFSTSKILSMMSTKLSPSALQEAKKLAIKTSDISDSWIYLLKSITENRTPFQQAREGVLEIMLRSRLREWLIERAAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKSGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTGSTITDASDCISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRSDRIELSSPEAEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPTEVVEKQESDVEEDFYLVSQKQAEERVEKAVVRVQAMFRSKKAQEEYRRMRLAYDEAALEYEVLSHPVYGNH 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28393905 28405038 + MELO3C021280.2.1 Cme11g02068 342731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02068 916 SUPERFAMILY E set domains 369 456 IPR014756 -
Cme11g02068 916 Pfam Ankyrin repeats (3 copies) 555 635 IPR002110 GO:0005515
Cme11g02068 916 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Cme11g02068 916 Gene3D Immunoglobulins 363 459 IPR013783 -
Cme11g02068 916 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Cme11g02068 916 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cme11g02068 916 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Cme11g02068 916 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cme11g02068 916 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Cme11g02068 916 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 910 - -
Cme11g02068 916 Gene3D - 771 817 - -
Cme11g02068 916 Gene3D - 507 669 IPR036770 -
Cme11g02068 916 Pfam IPT/TIG domain 370 455 IPR002909 -
Cme11g02068 916 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Cme11g02068 916 SUPERFAMILY Ankyrin repeat 568 668 IPR036770 -
Cme11g02068 916 CDD IPT 370 456 - -
Cme11g02068 916 Coils Coil 884 904 - -
Cme11g02068 916 ProSiteProfiles IQ motif profile. 770 797 IPR000048 GO:0005515
Cme11g02068 916 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Cme11g02068 916 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cme11g02068 916 SMART ANK_2a 645 674 IPR002110 GO:0005515
Cme11g02068 916 SMART ANK_2a 606 635 IPR002110 GO:0005515
Cme11g02068 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 820 IPR027417 -
Cme11g02068 916 SMART iq_5 769 791 IPR000048 GO:0005515
Cme11g02068 916 SMART iq_5 792 814 IPR000048 GO:0005515
Cme11g02068 916 SMART iq_5 870 892 IPR000048 GO:0005515
Cme11g02068 916 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 910 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02068 Cme-Chr11:28393905 Cme11g02321 Cme-Chr11:30254567 7.85E-123 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42242 PF03859 CG-1 5.40E-45 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02068 K21596 - csv:101211298 1703.72