Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02068 ATGTCTCTCTCCATGAAAGCCGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGTGCAAGATGGCTTCGCCCAAATGAAATCCATGCAATACTGTGTAACTATAAATATTTCATCATCCATGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGCAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTTGGTAATGTAGAAAGAATACATGTATACTATGCCCATGGCCTAGATAGCCCAACCTTTGTTCGCCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGTTTCAGATGTCTCCATCCACGTCGTTGAACTCAAATTCAGGTTCTGTCTCTAACCCACCAACTCCGTGGCTTTTATCAGAGGAACTTGATTCCAAGGCTGCTCATGTTTATTCTATTGGTGAAAACGAATTGTCAGAGCCTAGTGACACTACAACAGTCATGACTCATGAACAGCGGCTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGAAGGACGAGCCTTTCAAACCTGCCATGCCTAAAGGAGACAAACTTTCATCCTTCGACCAACAGAACCAAGTCCCAATAAACGCGACCAGCAATTTTGTGGGGGAGATGTCTTCATCTAGTAATCCAGTTGAGTCAACTGGGATGGCCAACGGCAATATCAGTTTCACTGGAAGTGCCAATCTGTTGTTACGTGGTCAAACAAATTTGAATGTGGAGAAGAGGGATTCCATTGCAATTAATTCTATGGACAATTTGTTAGATGAGAGACTGCAAAGTCAGGACAGCTTTGGGCGATGGATAAATGAAGTTATCATTGAGTCTCCTGGTTCAGTCATTGATCCCGCTATTGAACCATCCATTTCATCTGTTCACAATTCCTATCGTGATTCAACATTATATCACAGTCAAACTTTGGCTATGGAGCAAATTTTTAACATAACTGAAGTCTCACCTGCATGGGCCCTTTCAACAGAGAAAACAAAGATTCTAATTATTGGATATTTTCACAATGACTTTGTACATCTAGCAAAGTCCAACTTATTGGTTGTATGTGGTGATACCAGTGTTAATCTTGATTTTGTTCAACCTGGAGTTTATCGCTGTCTGGTACCACCACATTCACCTGGACTAGTACATTTATATGTGAGTGTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTGCACCAAATTTAGAAGTGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAAGAGTTTCAAATCCAGATGCGGCTTGCTCATATGTTATTCTCTACATCCAAGATTCTGAGCATGATGTCAACTAAATTGTCGCCCAGTGCCCTGCAGGAGGCTAAGAAACTTGCTATAAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCGTTTCAACAAGCAAGGGAAGGTGTTCTTGAGATCATGCTGAGAAGCAGGTTAAGGGAATGGCTGATAGAAAGAGCTGCTGAAGGCTCAAAGAAAAGTACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACCTGGGCTGTACATCTATTTGACTGGGCGGGTTTGTCGATAAACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAGAATGGTTGCCGTTCTTTTATCAGCGGGGGCAAAGCCAAACTTGGTCACTGATCCCTCATCTAAGAACCCTCTGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTATGATGGCTTAGCTGCTTATCTTTCTGAAAAGGCTTTGGTATCACACTTCAAAGAGATGAGCTTGGCTGGAAATGTCAGTGGCTCGTTGGATACTGGTAGTACAATAACTGATGCCTCTGATTGCATCAGCGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGCACAGCAGCTGATGCAGCAGCACGTATACAAGCTGCATTTCGTGAACATTCTTTAAAGCAAAGATCTGATAGAATTGAATTATCCTCCCCAGAAGCTGAGGCACGTAGTATTATTGCAGCCATGAAAATTCAACATGCCTACCGCAATTTTGAGACACGAAAAAAAATGGCAGCTGCTGCTCGTATCCAATACAGATTCCGTACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTAAGGAGGCAGTATCGCAAGATTGTTTGGTCAGTAGGTGTACTTGAGAAAGCTATACTGCGCTGGCGTCATAAGAGAAAAGGTTTCCGTGGGCTTCAAGTTGCACCTACTGAAGTGGTGGAAAAGCAGGAAAGTGACGTAGAAGAGGACTTCTACCTTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAAAGCTGTTGTTCGTGTTCAGGCTATGTTTCGATCAAAGAAAGCACAAGAAGAGTATCGTAGGATGAGGTTAGCCTATGATGAAGCAGCGTTGGAATATGAAGTACTTTCGCATCCTGTTTATGGTAATCATTAA 2751 41.88 MSLSMKADVQGSLVGSEIHGFHTLQDLDVKNIREEASARWLRPNEIHAILCNYKYFIIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDSPTFVRRCYWLLDKTLEHIVLVHYRETQEFQMSPSTSLNSNSGSVSNPPTPWLLSEELDSKAAHVYSIGENELSEPSDTTTVMTHEQRLHEINTLEWDDLLVKDEPFKPAMPKGDKLSSFDQQNQVPINATSNFVGEMSSSSNPVESTGMANGNISFTGSANLLLRGQTNLNVEKRDSIAINSMDNLLDERLQSQDSFGRWINEVIIESPGSVIDPAIEPSISSVHNSYRDSTLYHSQTLAMEQIFNITEVSPAWALSTEKTKILIIGYFHNDFVHLAKSNLLVVCGDTSVNLDFVQPGVYRCLVPPHSPGLVHLYVSVDGHKPISQALNFEYRAPNLEVPVVASEQIQKWEEFQIQMRLAHMLFSTSKILSMMSTKLSPSALQEAKKLAIKTSDISDSWIYLLKSITENRTPFQQAREGVLEIMLRSRLREWLIERAAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHLFDWAGLSINFRDKSGWTALHWAAYYGRERMVAVLLSAGAKPNLVTDPSSKNPLGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTGSTITDASDCISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRSDRIELSSPEAEARSIIAAMKIQHAYRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRHKRKGFRGLQVAPTEVVEKQESDVEEDFYLVSQKQAEERVEKAVVRVQAMFRSKKAQEEYRRMRLAYDEAALEYEVLSHPVYGNH 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28393905 28405038 + MELO3C021280.2.1 Cme11g02068 342731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02068 916 SUPERFAMILY E set domains 369 456 IPR014756 -
Cme11g02068 916 Pfam Ankyrin repeats (3 copies) 555 635 IPR002110 GO:0005515
Cme11g02068 916 ProSiteProfiles IQ motif profile. 872 900 IPR000048 GO:0005515
Cme11g02068 916 Gene3D Immunoglobulins 363 459 IPR013783 -
Cme11g02068 916 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Cme11g02068 916 Pfam CG-1 domain 35 148 IPR005559 GO:0003677
Cme11g02068 916 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Cme11g02068 916 SMART CG_1_2 32 150 IPR005559 GO:0003677
Cme11g02068 916 ProSiteProfiles IQ motif profile. 717 746 IPR000048 GO:0005515
Cme11g02068 916 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 20 910 - -
Cme11g02068 916 Gene3D - 771 817 - -
Cme11g02068 916 Gene3D - 507 669 IPR036770 -
Cme11g02068 916 Pfam IPT/TIG domain 370 455 IPR002909 -
Cme11g02068 916 ProSiteProfiles IQ motif profile. 793 817 IPR000048 GO:0005515
Cme11g02068 916 SUPERFAMILY Ankyrin repeat 568 668 IPR036770 -
Cme11g02068 916 CDD IPT 370 456 - -
Cme11g02068 916 Coils Coil 884 904 - -
Cme11g02068 916 ProSiteProfiles IQ motif profile. 770 797 IPR000048 GO:0005515
Cme11g02068 916 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Cme11g02068 916 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677
Cme11g02068 916 SMART ANK_2a 645 674 IPR002110 GO:0005515
Cme11g02068 916 SMART ANK_2a 606 635 IPR002110 GO:0005515
Cme11g02068 916 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 820 IPR027417 -
Cme11g02068 916 SMART iq_5 769 791 IPR000048 GO:0005515
Cme11g02068 916 SMART iq_5 792 814 IPR000048 GO:0005515
Cme11g02068 916 SMART iq_5 870 892 IPR000048 GO:0005515
Cme11g02068 916 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 6 20 910 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02068 K21596 CAMTA; calmodulin-binding transcription activator - csv:101211298 1703.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02068 Cme-Chr11:28393905 Cme11g02321 Cme-Chr11:30254567 7.85E-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g92 Blo01g00054 . Bda03g01166 Bda08g00378 Bpe04g01108 . Bma04g01136 Bma05g01017 Cmo08g01236 Cmo17g00349 . . . . . . . . . . . . . . Cla06g00439 Cam06g0464 Cec06g0470 Cco06g0469 Clacu06g0451 Cmu06g0452 Cre06g1228 Cone14ag0727 . . . . Csa06g01752 Chy11g01557 . . . . . Bpe05g00817 . . . . . . Cma08g01266 Cma17g00358 Car08g01136 Car17g00331 Cpe12g00311 Cpe17g00057 Bhi12g01914 Tan06g2741 . Lac11g0922 . . Lcy12g0790 . . . . . . . Lsi09g01478 . . Cme11g02068
Vvi5g245 . . . . . . . . Cmo08g01236 Cmo17g00349 . Cma14g01565 . Car14g01381 . . Cpe03g01309 . . . . . . . . . . . . . . Cone14ag0685 Cone15ag0697 . . . . Chy11g01557 . . . . . . . . . . . Cmo14g01600 Cma08g01266 Cma17g00358 . Car17g00331 . . . . . . . . . . . . . . . . . . . Cme11g02068
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00240 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.9 1.9e-276 949.1
Cme11g02321 . 6 933 CAMTA Transcription Factor Family AT1G67310 53.5 2.0e-259 892.5
Cme11g02068 . 34 908 CAMTA Transcription Factor Family AT3G16940 54.3 1.1e-258 889.8
Cme11g02068 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.7 7.1e-195 677.9
Cme01g00240 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.9 1.9e-276 949.1
Cme11g02321 . 6 933 CAMTA Transcription Factor Family AT1G67310 53.5 2.0e-259 892.5
Cme11g02068 . 11 630 CAMTA Transcription Factor Family AT4G16150 53.7 7.1e-195 677.9
Cme11g02068 . 34 908 CAMTA Transcription Factor Family AT3G16940 54.3 1.1e-258 889.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005047 3 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42242 PF03859 CG-1 5.40E-45 No_clan Cme TF