Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02082 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGGTCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAGCTGTCGCCGATTCCAACTCCGACCACCAAATCCACCATCACCACCATCACCATCAACGTTCTCAATCCATATCACCTCAACGTTCTAGATTTGCTGCCACTCGTAGAAGAGGTGGCACTGCCGGAGGTTTAGACGGCGCTGCTGCAGCCTGGAAAAGAGGCTCTTCCTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAAAACTCGCGACACTATGAATGCCGCCGCCTCCGCCGCCGCAGACGGCGGCGGCGGCTGCTCTGGTCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTAAATATCTTACAGTCAATGGGACAGCCTGTTTATATCTTTGACCTTAATTATCACATAATTTACTGGAACCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGTCAGGATGCCATTGAACTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAGTTCTTCGTGTAATGGCGGGTGAGAATTGGACCGGTCATTTACCTGTAAAGAACAAGATTGGGCAAAAATTTGTAGTTGTTGCTACCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCCACCGATTCCCGGCCATTTCAAGATTTGAAGATTCCTTTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGGTTCGATCACGAGTCCCGGTTTCAGTTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATCGCTTCGAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATCAGCTTGGATCGTGAAGGTGGAAGTGGAGATGGTTATCATTCTGATCATGGCCATCCAGATGCAGTTCTTTGTGATCATCGGGATGATGCAAATTCGAGTGGAGCTAGCACACCTCGAGGAGATTCCACGGCTCATGGTGCATTTTCCCAGGTTGAAGAGAAGTTATCTGGGAGACTGGTGAGGGATTCTAGTGATGAGGGTAAAGGAAAACCTACCATCCAGAAGATTTTGTCCTCGAAAGCAGAAGAATGGATTGCCAAGAAAGGCTTATCGTGGCCGTGGAAAGGGACTGAGCAAGAAGGAGGATCTGAAACAAGAGCAGCCCGTTTTGTTTGGCCTTGGGTACAAATTGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTCATCTATATCTGGTAAACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGTCAATAATGAGGCGTCGGGATCTTGGTCATCAATCAATATTAACAGCACTAGCAGTGTAAGTAGCTGTGGGAGTACCAGTAGTAGTGCTGTCAACAAGGTTGAATCGGACATGGACTGCTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGAGAGCAAATAGGACAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACATCCCAATATTCTTCTCTTTATGGGAGTAGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCACCATTGTAATCCACCCATTATTCACCGAGATTTGAAATCATCAAACCTCTTAATCGATAAAAACTGGACCGTGAAGGTTGGAGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCCCCCGAAGTTCTTCGTAACGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTTATTGGTGCTGTTGGTTTCATGAACCAACGTCTTGAAATCCCCAAGGACGTGGATCCGCAATGGACTTCAATTATTGAAAGCTGCTGGCACAGTGAACCTTCAAACCGGCCATCATTCCAAGTTTTGATAGAAAAGCTGAGAGACTTGCAAAGGAAGTATACTATTCAGTTACAAGCAGCTCGTTCTGGTGGAGATAACAACAACAATATCCCTCAAAAGGAAACATAA 2355 45.73 MGTPPAEELLRKVQELEEGQAHLKKEMSKLLLSGAVADSNSDHQIHHHHHHHQRSQSISPQRSRFAATRRRGGTAGGLDGAAAAWKRGSSSFRHSSPLQRESKTRDTMNAAASAAADGGGGCSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVVLRVMAGENWTGHLPVKNKIGQKFVVVATNTPFYDDGALVGIICVSTDSRPFQDLKIPLSVGSKQQDADSSMVRSRVPVSVKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKISLDREGGSGDGYHSDHGHPDAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGRLVRDSSDEGKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETRAARFVWPWVQIDQEAEPANHKSSSISGKPEMQQNDGHRAVNNEASGSWSSININSTSSVSSCGSTSSSAVNKVESDMDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWTSIIESCWHSEPSNRPSFQVLIEKLRDLQRKYTIQLQAARSGGDNNNNIPQKET 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28488715 28494245 + MELO3C021267.2.1 Cme11g02082 342745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02082 784 SUPERFAMILY Protein kinase-like (PK-like) 487 753 IPR011009 -
Cme11g02082 784 MobiDBLite consensus disorder prediction 308 382 - -
Cme11g02082 784 ProSiteProfiles Protein kinase domain profile. 503 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02082 784 MobiDBLite consensus disorder prediction 89 109 - -
Cme11g02082 784 MobiDBLite consensus disorder prediction 40 121 - -
Cme11g02082 784 Gene3D Transferase(Phosphotransferase) domain 1 581 783 - -
Cme11g02082 784 Pfam PAS fold 134 239 IPR013767 GO:0006355
Cme11g02082 784 MobiDBLite consensus disorder prediction 308 335 - -
Cme11g02082 784 MobiDBLite consensus disorder prediction 363 377 - -
Cme11g02082 784 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 775 - -
Cme11g02082 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Cme11g02082 784 SMART pas_2 133 200 IPR000014 -
Cme11g02082 784 CDD STKc_MAP3K-like 509 755 - -
Cme11g02082 784 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 775 - -
Cme11g02082 784 MobiDBLite consensus disorder prediction 338 352 - -
Cme11g02082 784 TIGRFAM sensory_box: PAS domain S-box protein 133 242 IPR000014 -
Cme11g02082 784 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 242 IPR035965 -
Cme11g02082 784 MobiDBLite consensus disorder prediction 429 457 - -
Cme11g02082 784 Gene3D PAS domain 143 245 - -
Cme11g02082 784 CDD PAS 142 242 IPR000014 -
Cme11g02082 784 PRINTS Tyrosine kinase catalytic domain signature 577 590 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 PRINTS Tyrosine kinase catalytic domain signature 616 634 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 PRINTS Tyrosine kinase catalytic domain signature 663 673 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 PRINTS Tyrosine kinase catalytic domain signature 682 704 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 PRINTS Tyrosine kinase catalytic domain signature 726 748 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 Gene3D Phosphorylase Kinase; domain 1 496 580 - -
Cme11g02082 784 ProSiteProfiles PAS repeat profile. 131 202 IPR000014 -
Cme11g02082 784 MobiDBLite consensus disorder prediction 430 457 - -
Cme11g02082 784 Pfam Protein tyrosine and serine/threonine kinase 503 755 IPR001245 GO:0004672|GO:0006468
Cme11g02082 784 Coils Coil 6 26 - -
Cme11g02082 784 SMART serkin_6 503 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02082 Cme-Chr11:28488715 Cme12g01838 Cme-Chr12:24732892 1.63E-107 dispersed
Cme12g01253 Cme-Chr12:20660326 Cme11g02082 Cme-Chr11:28488715 3.10E-46 dispersed
Cme11g02082 Cme-Chr11:28488715 Cme04g02435 Cme-Chr4:30989682 3.25E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65273 PF07714 PK_Tyr_Ser-Thr 3.50E-69 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02082 - - csv:101221874 1388.63