Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02082 | ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGGTCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAGCTGTCGCCGATTCCAACTCCGACCACCAAATCCACCATCACCACCATCACCATCAACGTTCTCAATCCATATCACCTCAACGTTCTAGATTTGCTGCCACTCGTAGAAGAGGTGGCACTGCCGGAGGTTTAGACGGCGCTGCTGCAGCCTGGAAAAGAGGCTCTTCCTCGTTTCGACATTCTTCTCCTCTTCAGAGAGAGAGTAAAACTCGCGACACTATGAATGCCGCCGCCTCCGCCGCCGCAGACGGCGGCGGCGGCTGCTCTGGTCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTAAATATCTTACAGTCAATGGGACAGCCTGTTTATATCTTTGACCTTAATTATCACATAATTTACTGGAACCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGTCAGGATGCCATTGAACTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAGTTCTTCGTGTAATGGCGGGTGAGAATTGGACCGGTCATTTACCTGTAAAGAACAAGATTGGGCAAAAATTTGTAGTTGTTGCTACCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCCACCGATTCCCGGCCATTTCAAGATTTGAAGATTCCTTTATCAGTAGGTTCTAAACAGCAGGATGCAGATTCAAGCATGGTTCGATCACGAGTCCCGGTTTCAGTTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATCGCTTCGAAGTTATCGAATTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATCAGCTTGGATCGTGAAGGTGGAAGTGGAGATGGTTATCATTCTGATCATGGCCATCCAGATGCAGTTCTTTGTGATCATCGGGATGATGCAAATTCGAGTGGAGCTAGCACACCTCGAGGAGATTCCACGGCTCATGGTGCATTTTCCCAGGTTGAAGAGAAGTTATCTGGGAGACTGGTGAGGGATTCTAGTGATGAGGGTAAAGGAAAACCTACCATCCAGAAGATTTTGTCCTCGAAAGCAGAAGAATGGATTGCCAAGAAAGGCTTATCGTGGCCGTGGAAAGGGACTGAGCAAGAAGGAGGATCTGAAACAAGAGCAGCCCGTTTTGTTTGGCCTTGGGTACAAATTGATCAAGAAGCTGAACCAGCTAATCATAAGAGTTCATCTATATCTGGTAAACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGTCAATAATGAGGCGTCGGGATCTTGGTCATCAATCAATATTAACAGCACTAGCAGTGTAAGTAGCTGTGGGAGTACCAGTAGTAGTGCTGTCAACAAGGTTGAATCGGACATGGACTGCTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGAGAGCAAATAGGACAAGGTTCTTGTGGAACTGTCTATCATGCACTGTGGTATGGATCAGATGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACATCCCAATATTCTTCTCTTTATGGGAGTAGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCACGAGGCATGAACTATCTTCACCATTGTAATCCACCCATTATTCACCGAGATTTGAAATCATCAAACCTCTTAATCGATAAAAACTGGACCGTGAAGGTTGGAGATTTTGGTCTATCTCGACTTAAGCATGAGACTTATCTAACAACTAAGACCGGAAAGGGCACGCCTCAATGGATGGCCCCCGAAGTTCTTCGTAACGAGCCCTCGGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCAATGCAGGTTATTGGTGCTGTTGGTTTCATGAACCAACGTCTTGAAATCCCCAAGGACGTGGATCCGCAATGGACTTCAATTATTGAAAGCTGCTGGCACAGTGAACCTTCAAACCGGCCATCATTCCAAGTTTTGATAGAAAAGCTGAGAGACTTGCAAAGGAAGTATACTATTCAGTTACAAGCAGCTCGTTCTGGTGGAGATAACAACAACAATATCCCTCAAAAGGAAACATAA | 2355 | 45.73 | MGTPPAEELLRKVQELEEGQAHLKKEMSKLLLSGAVADSNSDHQIHHHHHHHQRSQSISPQRSRFAATRRRGGTAGGLDGAAAAWKRGSSSFRHSSPLQRESKTRDTMNAAASAAADGGGGCSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVVLRVMAGENWTGHLPVKNKIGQKFVVVATNTPFYDDGALVGIICVSTDSRPFQDLKIPLSVGSKQQDADSSMVRSRVPVSVKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKISLDREGGSGDGYHSDHGHPDAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGRLVRDSSDEGKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETRAARFVWPWVQIDQEAEPANHKSSSISGKPEMQQNDGHRAVNNEASGSWSSININSTSSVSSCGSTSSSAVNKVESDMDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWTSIIESCWHSEPSNRPSFQVLIEKLRDLQRKYTIQLQAARSGGDNNNNIPQKET | 784 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28488715 | 28494245 | + | MELO3C021267.2.1 | Cme11g02082 | 342745 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02082 | 784 | SUPERFAMILY | Protein kinase-like (PK-like) | 487 | 753 | IPR011009 | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 308 | 382 | - | - | |
Cme11g02082 | 784 | ProSiteProfiles | Protein kinase domain profile. | 503 | 763 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 89 | 109 | - | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 40 | 121 | - | - | |
Cme11g02082 | 784 | Gene3D | Transferase(Phosphotransferase) domain 1 | 581 | 783 | - | - | |
Cme11g02082 | 784 | Pfam | PAS fold | 134 | 239 | IPR013767 | GO:0006355 | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 308 | 335 | - | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 363 | 377 | - | - | |
Cme11g02082 | 784 | PANTHER | SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED | 37 | 775 | - | - | |
Cme11g02082 | 784 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 622 | 634 | IPR008271 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | SMART | pas_2 | 133 | 200 | IPR000014 | - | |
Cme11g02082 | 784 | CDD | STKc_MAP3K-like | 509 | 755 | - | - | |
Cme11g02082 | 784 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 37 | 775 | - | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 338 | 352 | - | - | |
Cme11g02082 | 784 | TIGRFAM | sensory_box: PAS domain S-box protein | 133 | 242 | IPR000014 | - | |
Cme11g02082 | 784 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 135 | 242 | IPR035965 | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 429 | 457 | - | - | |
Cme11g02082 | 784 | Gene3D | PAS domain | 143 | 245 | - | - | |
Cme11g02082 | 784 | CDD | PAS | 142 | 242 | IPR000014 | - | |
Cme11g02082 | 784 | PRINTS | Tyrosine kinase catalytic domain signature | 577 | 590 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | PRINTS | Tyrosine kinase catalytic domain signature | 616 | 634 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | PRINTS | Tyrosine kinase catalytic domain signature | 663 | 673 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | PRINTS | Tyrosine kinase catalytic domain signature | 682 | 704 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | PRINTS | Tyrosine kinase catalytic domain signature | 726 | 748 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | Gene3D | Phosphorylase Kinase; domain 1 | 496 | 580 | - | - | |
Cme11g02082 | 784 | ProSiteProfiles | PAS repeat profile. | 131 | 202 | IPR000014 | - | |
Cme11g02082 | 784 | MobiDBLite | consensus disorder prediction | 430 | 457 | - | - | |
Cme11g02082 | 784 | Pfam | Protein tyrosine and serine/threonine kinase | 503 | 755 | IPR001245 | GO:0004672|GO:0006468 | |
Cme11g02082 | 784 | Coils | Coil | 6 | 26 | - | - | |
Cme11g02082 | 784 | SMART | serkin_6 | 503 | 763 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g02082 | Cme-Chr11:28488715 | Cme12g01838 | Cme-Chr12:24732892 | 1.63E-107 | dispersed | |
Cme12g01253 | Cme-Chr12:20660326 | Cme11g02082 | Cme-Chr11:28488715 | 3.10E-46 | dispersed | |
Cme11g02082 | Cme-Chr11:28488715 | Cme04g02435 | Cme-Chr4:30989682 | 3.25E-103 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65273 | PF07714 | PK_Tyr_Ser-Thr | 3.50E-69 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02082 | - | - | csv:101221874 | 1388.63 |