Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme11g02089 | ATGGCGTCATCTGTTCTTTCGAACTCCGATCGTGCACGGGAGTCTTCTTCGAGGAAGCAAAAGAAGAAGAAAAGCCATGGCAATAGAGATCATCATCAAAGCCAGAATCATCATATTAAATGGAAATCTCAAGCTCAACAGGAAATTTACTCATCCAAGCTAGTGCGAGCATTGAATCAAGTCAGACTCAGTCCTTCAAACGAGGCGCCGCCACGCCGCGGCAGAGCCGTACGTGAAGCCGCCGATAGAGTCCTTGCCGTTGCCGCCAAGGGGAGAACTAGATGGAGTCGAGCCATATTAACGAACAGGTTGAAGCTGAAGTTTAGGAAGGCGCCAAGGAGACAGAGATCAACATCCAGCGCTGGAAACAACCGCTCAAAGAAACCTAGAGTCAGCGTATTGCGGTTGAGAGGGAAATCCTTGCCGGCGGTACAAAGGAAAGTTAGGGTCCTTGGTCGGCTGGTTCCCGGTTGCCGGAAAGAACCATTGCCGGTTATTCTGGAAGAAGCTACCGATTACATAGCTGCACTTGAAATGCAAGTTCGGGCCATGAGTGCCCTTGCTGAGTTGCTCTCGGCTTCAACTTCTGCTGCAGGCTCTAGTTCATCTCCTCCAAGCTGA | 621 | 50.56 | MASSVLSNSDRARESSSRKQKKKKSHGNRDHHQSQNHHIKWKSQAQQEIYSSKLVRALNQVRLSPSNEAPPRRGRAVREAADRVLAVAAKGRTRWSRAILTNRLKLKFRKAPRRQRSTSSAGNNRSKKPRVSVLRLRGKSLPAVQRKVRVLGRLVPGCRKEPLPVILEEATDYIAALEMQVRAMSALAELLSASTSAAGSSSSPPS | 206 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 28535881 | 28537330 | + | MELO3C021260.2.1 | Cme11g02089 | 342752 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme11g02089 | 206 | PANTHER | TRANSCRIPTION FACTOR BHLH148-LIKE ISOFORM X1 | 16 | 205 | - | - | |
| Cme11g02089 | 206 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Cme11g02089 | 206 | MobiDBLite | consensus disorder prediction | 109 | 132 | - | - | |
| Cme11g02089 | 206 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 147 | 195 | IPR036638 | GO:0046983 | |
| Cme11g02089 | 206 | PANTHER | TRANSCRIPTION FACTOR IBH1-LIKE 1 | 16 | 205 | IPR044660 | GO:0006355 | |
| Cme11g02089 | 206 | MobiDBLite | consensus disorder prediction | 17 | 38 | - | - | |
| Cme11g02089 | 206 | CDD | bHLH_AtIBH1_like | 133 | 188 | IPR044549 | GO:0006355 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme02g00030 | Cme-Chr2:294326 | Cme11g02089 | Cme-Chr11:28535881 | 1.70E-49 | dispersed | |
| Cme05g01448 | Cme-Chr5:23898586 | Cme11g02089 | Cme-Chr11:28535881 | 9.47E-06 | dispersed | |
| Cme05g01536 | Cme-Chr5:24744123 | Cme11g02089 | Cme-Chr11:28535881 | 4.14E-41 | dispersed | |
| Cme11g02089 | Cme-Chr11:28535881 | Cme06g00797 | Cme-Chr6:5290006 | 3.35E-74 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme11g02089 | - | - | csv:101220618 | 334.339 |