Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02090 ATGTATGTATTTTGTATGGAGGAAGAGAAGAAGGAAGAAGTTTTGGGAAATAATAGAGATCAGAATTCGATGGGAAATCCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATCATAATAATAATTTGTTCGATTTTCCATTAATCGACTCCATTGATTCTTCTTTCAAGCCTTCCACTTTCTTGGATTTGTTAGCTACTCAAGATTATACCCCTTCTTTGTTCGATCTTTTCTCTCCTCCGCCTCCGCCGCCGCAACCCCCGCTTCCTCCGCCATCCTCCGCCGTACCGGAGTCTTCTGAAGTTCTTAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGTGCTTTCGACAACGATGACGTGGATCGGGATAAGTCCCCTTTCAACAAACAATTGAAAGCAAAAAAGAACCAAAAAAAAGGAAGAGAACCAAGATTTGCGTTCATGACAAAAAGCGAAGTGGATCACTTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTACCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCTTCCGACGACCCTTCCATCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTTTATCCTCCACCGCCTACACCGCCTCCCCACAACAACACCAACAACAACCGCCGCTTGTTTTCTCATCACAGCCGCAACAATTATACCGCAACCAATTTACGTACGCTCCGGCGCCGCCCGTGGACGTTGTCACGTGCGGCGGAGGGTTCGGTCACGTGTTTCACAGTTTTGGAGAAGAACGACGACGCATCGATGATAGAACTACACCTGATTCTTTCCAAGACCATGGCCTTCTTCAAGATATGATCGTACCGTTCCCAGAAGAAGAAAAAAAAGTTAATTGA 978 46.73 MYVFCMEEEKKEEVLGNNRDQNSMGNPGLLFSDAIIPNNHNNNLFDFPLIDSIDSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPQPPLPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERAFDNDDVDRDKSPFNKQLKAKKNQKKGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSIVVTTYEGQHTHQSPIMPRGALSSTAYTASPQQHQQQPPLVFSSQPQQLYRNQFTYAPAPPVDVVTCGGGFGHVFHSFGEERRRIDDRTTPDSFQDHGLLQDMIVPFPEEEKKVN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28560931 28562595 + MELO3C000030.2.1 Cme11g02090 342753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02090 325 SUPERFAMILY WRKY DNA-binding domain 157 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g02090 325 ProSiteProfiles WRKY domain profile. 160 225 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g02090 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 86 314 IPR044810 GO:0003700
Cme11g02090 325 MobiDBLite consensus disorder prediction 77 96 - -
Cme11g02090 325 SMART WRKY_cls 165 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g02090 325 Pfam WRKY DNA -binding domain 166 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme11g02090 325 Gene3D WRKY domain 150 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme11g02090 325 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 86 314 - -
Cme11g02090 325 MobiDBLite consensus disorder prediction 76 154 - -
Cme11g02090 325 MobiDBLite consensus disorder prediction 123 139 - -
Cme11g02090 325 MobiDBLite consensus disorder prediction 98 122 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme06g00800 Cme11g02090 CCT
Cme06g00800 Cme11g02090 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00164 Cme-Chr8:1148798 Cme11g02090 Cme-Chr11:28560931 7.27E-46 dispersed
Cme08g00478 Cme-Chr8:2976828 Cme11g02090 Cme-Chr11:28560931 2.83E-36 dispersed
Cme11g00203 Cme-Chr11:2425562 Cme11g02090 Cme-Chr11:28560931 5.81E-34 dispersed
Cme11g01573 Cme-Chr11:23318618 Cme11g02090 Cme-Chr11:28560931 2.17E-40 dispersed
Cme04g01062 Cme-Chr4:14486628 Cme11g02090 Cme-Chr11:28560931 4.52E-36 transposed
Cme03g01437 Cme-Chr3:23732372 Cme11g02090 Cme-Chr11:28560931 3.52E-46 transposed
Cme01g02183 Cme-Chr1:30682504 Cme11g02090 Cme-Chr11:28560931 8.81E-51 wgd
Cme11g02090 Cme-Chr11:28560931 Cme06g00800 Cme-Chr6:5322743 2.87E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42243 PF03106 WRKY 4.40E-27 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02090 - - csv:101205991 525.013