Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02097 GATTTCCAACTCTTTTATGCTTTTGTCGTTGATAATGGGGTCGGGGAGATAGCTTTTACCGGAATACGGAATTCTCACGCCGTGTTTTCAACGCACAAATTGAATTTCCGACACCCTTATATTATTATCACCTCCACTCCCCCACCGCCGCCGCCTCTCCCGCCGTCTTCTTGGGCATTGGATTCAAGCCCACCTTCTCCGCCGTCCGCTCTTACTCTTTCCCTATCTCCGTACTCTTCTTCTCCGGTCGCTGTTGCAGAACCTAACTCTTCTTCCGCGGCCACAACTTCCTTCTTATCAACTCCACTGGTTTTCTTTCGCCTTGGCTGCACTTTTCTCACTTCCATTGGCGTAGTTGTGCTGAAATTTGAGATTACGTTTCAATCTGTTAATGTGCTTGGCCATATTTTGATGAACGCTACAGTCCTGCTTGGTTGCTCTGGACCTCGTGTTGTCATTAAAAATGATCGAGTTGAATATTTCTTGAAATTGTACCTTAAATTCACTTTTCAATGGCTCGTAAGGGTAATCAACAGAAAACAGGGTCAGAGCGCCATGCATCGAACATCCAAGGGGCAGGGAAGAGCACGAGAAATAAAGGTTTTTCCCGGAGAGGAACTACCAAATGAGAACCAAAATAGTAGACCCTTCGAGGAAGGGATGATGAATAATGACTCTGGAGAGGGTTTGAAGAATCTAAAGAAGTCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATACTCTAGAGGAACCCAAATTTCCCTCCGAAGAATCCGAGAACTGTGATCGAAATAACGGGGGCCCTAGTGTAGGAGAACAGGGGTCTGCTGGTGATAAGGACCAGGTTCAGGTAGATGGTAGCTTCAACTTCTTTTTGAATGGAGAACACATCAGAAGTGTGATGGCTAATCTGAATTTTTCAGATAATGTTTTGGTGAAAAGTTTTGTGGAATCTATGTCATCAATATTTGAAGCATCCCATGTGTTTTTGGAGCATCATAGACCTCTGTTGAATTCTATGAAGAACAACTTACTAAACACAAGTGACTATGTGGTAAAGAAGATTATGACAGCATATCCCATTGTTCTGAAATGGATGATGCATTTTGGGAACATAATACTTCTCTTCTCGATTGTATGGTTGGACTGTGCCCTCAGGGGCATCGATTCCTTTATTCGTATGGGGACAACATCCTTCTTTGCAGTTATATGGTTTTCCATTCTTTCAACAATTGCAATGGTTGGATTTCTTAAATTCCTTGTTGTCTTGGTAGTAGCTGCTTCCCTTGGAATTTTTGTCGGGTTTGCTTTTGCTATTTTGGTCATCGCCATCTCTGGAGCAGCTTTCCTTTGGTTCTACGGAAACTTTTGGATGACAATGCTGATTATCTTCCTTGGAGGATTGGCCTTTATATTGAGCCACGAAAGAATTGCACTTTCAATCACCACTTTATATTCGGTTTATTGTGCATGGGTATGCACTGGATGGCTTGGTTTGCTTTTGGGCCTGAATTTGTCATTTATTTCAAGCGATGCACTGATTTATGTCCTAAAGAACAACATGAATGAGCATAGGAGATCAAACAGATATCCTGAACAAACAACTGGGATGCAAGATCAGTCTAGCTTCTCTCATGATGACCCCATGCAAGCATCATCTTCTGAATTTAGCAGTACAGGTTTTGCTGCTGATCGGTGTTCAGGCACACCCTCAACCAGTGGAGCTGATTCTGAGATATCTTCCGAAGATGAAGTTGTCCGTTTGCTGAATTGCTCAGATCACTATGCAGCTTTGGGATTGTCTCGGTATGAAAATATAGATACTTCCCTACTCAAGAAGGAGTATAGGAAAAAGGCTATGTTGGTCCATCCCGATAAAAATATGGGCAATGAAAAGGCTGCCGAAGCATTTAAGAAACTTCAAAATGCATACGAGGTTTTACTTGATTCGATAAAACGAAAAACCTATGATGATGAGCTGAGAAGGGAAGAGCTGCTAAACATTTTCCGGAGGTTTCAGAGTGATTCACAGAAGAGTGGTCCATTTGGGTTTTCAAGATCGGCAACAAATAGAGAGGATCCTTTCGGTGAATCAAGACGAATAGCCTGCAAAAAGTGCAACAATTTTCATTTATGGATACACACTAGGAAATTGAAATCTCAAGCAAGATGGTGCCAGGAATGCAAAGATTTTCATCAAGCAAAGGATGGGGATGGGTGGGTGGAGCAATCTTCCCAGCCTTTTCTTTTTGGATTGCTGCAGAAGGTAGATGCTCCTTGTGCATACGTATGTGCAGAGAGCCGAATATATGATGCAACCGGATGGTATATTTGTCAGGGAATGAGATGTCCAGCTAACACCCACAAGCCAAGTTTTCACGTAAACACAAGTGTAACCTCTAAGCAAAACACCTCTAGAGGGTCAAGTTCTAGCCAAAGAGGACAGATGCCTGCATCAAATATGGAAGAGAACATGACAGAAGAAGAGTTCTTTGAGTGGTTTCAGAATGCCATGCAGACAGGTGCATTCGACAACGTTGGTGGTAGTGCCACGGAGAGCCCGCCGTCTAAAGCAGGAGGAAGTTTTAGCAAGAGCAGTAACAATAGTGGCAGTGGTAACAAGAAAAAGAAGAAAGGAAAGAAGCAGTGGTGA 2667 42.82 DFQLFYAFVVDNGVGEIAFTGIRNSHAVFSTHKLNFRHPYIIITSTPPPPPPLPPSSWALDSSPPSPPSALTLSLSPYSSSPVAVAEPNSSSAATTSFLSTPLVFFRLGCTFLTSIGVVVLKFEITFQSVNVLGHILMNATVLLGCSGPRVVIKNDRVEYFLKLYLKFTFQWLVRVINRKQGQSAMHRTSKGQGRAREIKVFPGEELPNENQNSRPFEEGMMNNDSGEGLKNLKKSAKSLRKEKQGIEGLHTLEEPKFPSEESENCDRNNGGPSVGEQGSAGDKDQVQVDGSFNFFLNGEHIRSVMANLNFSDNVLVKSFVESMSSIFEASHVFLEHHRPLLNSMKNNLLNTSDYVVKKIMTAYPIVLKWMMHFGNIILLFSIVWLDCALRGIDSFIRMGTTSFFAVIWFSILSTIAMVGFLKFLVVLVVAASLGIFVGFAFAILVIAISGAAFLWFYGNFWMTMLIIFLGGLAFILSHERIALSITTLYSVYCAWVCTGWLGLLLGLNLSFISSDALIYVLKNNMNEHRRSNRYPEQTTGMQDQSSFSHDDPMQASSSEFSSTGFAADRCSGTPSTSGADSEISSEDEVVRLLNCSDHYAALGLSRYENIDTSLLKKEYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSIKRKTYDDELRREELLNIFRRFQSDSQKSGPFGFSRSATNREDPFGESRRIACKKCNNFHLWIHTRKLKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPCAYVCAESRIYDATGWYICQGMRCPANTHKPSFHVNTSVTSKQNTSRGSSSSQRGQMPASNMEENMTEEEFFEWFQNAMQTGAFDNVGGSATESPPSKAGGSFSKSSNNSGSGNKKKKKGKKQW 888
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28602320 28609667 - MELO3C021254.2.1 Cme11g02097 342760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02097 888 PANTHER OS03G0832900 PROTEIN 182 888 - -
Cme11g02097 888 Coils Coil 230 250 - -
Cme11g02097 888 ProSiteProfiles dnaJ domain profile. 598 665 IPR001623 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 799 829 - -
Cme11g02097 888 MobiDBLite consensus disorder prediction 532 584 - -
Cme11g02097 888 SUPERFAMILY Chaperone J-domain 554 661 IPR036869 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 204 283 - -
Cme11g02097 888 Pfam Cleavage inducing molecular chaperone 702 800 IPR032843 -
Cme11g02097 888 Gene3D DnaJ domain 586 680 IPR036869 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 847 875 - -
Cme11g02097 888 Pfam DnaJ domain 598 662 IPR001623 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 799 827 - -
Cme11g02097 888 PANTHER OS03G0832900 PROTEIN 182 888 - -
Cme11g02097 888 PRINTS DnaJ domain signature 637 657 IPR001623 -
Cme11g02097 888 PRINTS DnaJ domain signature 620 635 IPR001623 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 847 888 - -
Cme11g02097 888 CDD DnaJ 598 654 IPR001623 -
Cme11g02097 888 MobiDBLite consensus disorder prediction 231 264 - -
Cme11g02097 888 MobiDBLite consensus disorder prediction 536 584 - -
Cme11g02097 888 SMART dnaj_3 597 657 IPR001623 -
Cme11g02097 888 ProSitePatterns Nt-dnaJ domain signature. 642 661 IPR018253 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02097 K09534 DNAJC14; DnaJ homolog subfamily C member 14 - qsu:112036044 848.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01236 Cme-Chr1:15739698 Cme11g02097 Cme-Chr11:28602320 1.70E-09 dispersed
Cme07g01428 Cme-Chr7:19994030 Cme11g02097 Cme-Chr11:28602320 5.56E-36 dispersed
Cme11g02097 Cme-Chr11:28602320 Cme01g00483 Cme-Chr1:3487893 3.86E-09 dispersed
Cme11g02097 Cme-Chr11:28602320 Cme04g00239 Cme-Chr4:1883858 9.90E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g34 Blo01g00041 . . Bda08g00322 . . . Bma05g01008 Cmo08g01259 Cmo17g00374 . . . . . . . . . . . . . . Cla06g00411 Cam06g0434 Cec06g0440 Cco06g0439 Clacu06g0420 Cmu06g0420 Cre06g1199 . . . . . Csa06g01853 Chy11g01588 . . . . . Bpe05g00806 . . . Sed04g3077 . . Cma08g01294 Cma17g00385 Car08g01159 Car17g00355 Cpe12g00336 Cpe17g00081 Bhi12g01953 Tan06g2785 Cmetu11g0566 . . . Lcy12g0870 . . . . . . . . . . Cme11g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008621 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 0 1 1 1 1 35