Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02100 ATGTTCTTCACGGGCGATTCATCTACTCGCAAGCGAGTTGATTTAGGTGGACGGAGTTCTAAGGAACGAGATAGGCAGAAGCTTCTTGAGCAGACTAGATTGGAGCGGAACCGCCGATTGTCATTGAGACAGCAGAATTTTGCTGCTCTCAAAATTCAGAAATGCTTCAGAGGGAGAAAGGCCTCTGAAGCTGCACGTTTTAGAGTACGAGAGCAATTTCACGATACTTATGGAAAACATTGTGAGAAAGTTGACAGGCATTGTTTTGGTCCTGATTCAGAGTTTTTCCACCAGCTACTCTTTTTCTACAATGCAAAACACATCGATGATTTTTCGGTTCTTGTAGAGGCTTGTCGGTTACTTCGGAAATTTGTTCAAGAAAATGGGGATATTTTGAGCATTTTTGCTGGCAAGGATTATTTACTTAACAAGGCCTTGGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACCCTAACACACCTGCGACTGTACTGTTAGACACAATTGTTTTCTTATTACAACCTGGACTCCCATGGGTTTGTAAAATTGTTGGCTACTTTCTGGAAAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAGGAAAGTGCAGATTCACATCCCAAAAGTTCATTGGTTTCTCTAGAACATCTGCTTTCTCTTTTGAGTTCTCATGTTGGTGAGAAGCCATGCTGTTGCCCTCGTGTGGATCCCAATTGGAGTTTCTCCTCCCAAATTCTTACTCTTCCTTTACTGTGGCAGACATTCCCTTACTTAAAGGAGGTTTTCGCTAGATGGGGGTTGATTGGACATTACATTCATCAGATGGCATCATGTGTTCAGCATTATGCAAATGTACTCCCAAAGGATGTAACAGCTGACATTCCTGGGTATGCTTGCCTTCTTGGAAATGTATTGGAAATTTCCAGAACCGCTCTGTCTCAGCCTGACTGCTCATCCGAATTGGCAGTAGATCTTGCTTCTGTCACGACATTCTTGTTGGAACTTCTTCCGTCGATGAAATTGCCTCATAGAGATATAAAAGATAGTGCCACATTGGGCGATGATGATGTGGTTGTGTCTGATCAAGAAATAGAGTTAGCATTGAATAAAGATGTTGAGAAGCAGATATGTGATGCTATTGATCCACGATTTCTTCTGCAGTTGGTATTCCATCTTCTGGCGAATGCTTTATTTGGACAGATTTCACGAGTTAGTGGCCCTTATGATGGTCCTGATGATAAAGAGGTCAAAGCTGTTGGTACAGCCTGTGCTTTTCTGCACGTCACTTTCAATACCCTGCCTCTGGAGCAAATTATGACTGTTCTAGCATACAGAACGGAGTTAGTTCCAGTACTCTGGAGTTTTATTAAAAAGTGCCACGAGAATCAAAAATGGTCATCCTTTTCAGAGAAGTTGGCATATTTATCAGGAGATGCACCTGGTTGGCTATTACCTTTGGCTGTTTTCTGTCCTGTGTACAAGCACATGCTGACAATAATTGACAATGAGGAGTTTTATGAGCAGGAGAAGCCACTATCATTAAAGGACATCAGATGCCTGATTGTTATTTTAAGACAGGCCCTATGGCAGCTTTTATGGGTGAGTCCTACGGCTCCTAGTAATTCTGCAAAACATGCTGCTAGTGGCCATGCAACTAAGAGGCACACCGTTGAATTTATTCAATACAGGGTTACAATTGTTGCCTCAGAGCTCCTGTCACAGTTGCAAGACTGGAACAATAGACGGCAGTTTACACCCCCAAGTGACTTCCATGCTGACGCCGTGAATGATTATTTCATTTCTCAGGCAGTTATAGAAAACACCAGAGCAAATGACATACTTAAGCGAGCTCCCTTTTTAGTACCGTTCACAAGCAGGGTTAAGATTTTCACTTCACAGCTAGCAGCAGCTAGGCAAAGGAATGGATCTCATGTTGTTTTTGCCAGAAACCGGTTTAGAATTCGACGAAATCATATATTGGAAGATGCGTTCAGTCAGATGAGTGCATTGTCTGAAGATGATCTTCGAGGATCGATACGTGTGTCTTTTGTTAATGAATTTGGAGTTGAGGAGGCAGGAATTGATGGTGGTGGTATTTTTAAAGATTTCATGGAGAACATTACACGGGCAGCCTTTGATGTGCAGTATGGTTTATTTAAGGAAACAGCTGATCATTTGCTCTACCCCAATCCTGGTTCGGGAATGATACACGAGCAACATCTCCAGTTTTTCCATTTCCTCGGAGTTCTTTTGGCAAAGTTCCGACACCAAGAAAATGCACAGAAAATGGCTGATTCAAGGATATCCTTCACGGTGTTGGCCTCATCATGGAAGATTCTTCATTATGAAGGTGACATTTCTGAACTGGAGCTATATTTTGTTATTATAAACAACGAATATGGAGAGCAAACTGAAGAAGAGCTACTTCCTGGAGGAAAAAACCGTCGCGTCACCAGTGAAAATGTCATCACATTCATTCATCTTGTTGCCAATCATCGTTTGAACTTTCAGATACGGCAGCAAAGTTCTCATTTTTTGAGAGGGTTTCAGCAACTTATACAGAAAGAATGGATCGATATGTTCAATGAGCATGAATTCCAGCTTTTAATATCCGGTTCACTGGACAGCTTGGATGTTGATGACCTACGGACACATACTACTTATTCAAGTGGTTATCATAGAATGATGTTGGAGGATCTCACCGGGGAGCATTATGTCATTGAGATGTTTTGGGAAGTTATCAAAAGTTTCTCAGTGGAAAACCAAAAGAAATTTCTGAAGTTTGTAACTGGTTGCTCTCGAGGACCGCTTCTTGGCTTTAAATATCTTGAGCCATGTTTTTGCATACAAAGGGCTGCTGGCAATGCAAATGAAGAAGCTCTTGATCGCTTACCTACATCGGCGACTTGTATGAATCTTTTGAAGCTTCCACCCTATAGAAGCAAGGAGCAGCTGGCAAACAAATTGCTTTATGCCATAAATGCAGATGCTGGTTTTGATCTAAGCTAA 3087 41.66 MFFTGDSSTRKRVDLGGRSSKERDRQKLLEQTRLERNRRLSLRQQNFAALKIQKCFRGRKASEAARFRVREQFHDTYGKHCEKVDRHCFGPDSEFFHQLLFFYNAKHIDDFSVLVEACRLLRKFVQENGDILSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNPNTPATVLLDTIVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGKESADSHPKSSLVSLEHLLSLLSSHVGEKPCCCPRVDPNWSFSSQILTLPLLWQTFPYLKEVFARWGLIGHYIHQMASCVQHYANVLPKDVTADIPGYACLLGNVLEISRTALSQPDCSSELAVDLASVTTFLLELLPSMKLPHRDIKDSATLGDDDVVVSDQEIELALNKDVEKQICDAIDPRFLLQLVFHLLANALFGQISRVSGPYDGPDDKEVKAVGTACAFLHVTFNTLPLEQIMTVLAYRTELVPVLWSFIKKCHENQKWSSFSEKLAYLSGDAPGWLLPLAVFCPVYKHMLTIIDNEEFYEQEKPLSLKDIRCLIVILRQALWQLLWVSPTAPSNSAKHAASGHATKRHTVEFIQYRVTIVASELLSQLQDWNNRRQFTPPSDFHADAVNDYFISQAVIENTRANDILKRAPFLVPFTSRVKIFTSQLAAARQRNGSHVVFARNRFRIRRNHILEDAFSQMSALSEDDLRGSIRVSFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGVLLAKFRHQENAQKMADSRISFTVLASSWKILHYEGDISELELYFVIINNEYGEQTEEELLPGGKNRRVTSENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKEWIDMFNEHEFQLLISGSLDSLDVDDLRTHTTYSSGYHRMMLEDLTGEHYVIEMFWEVIKSFSVENQKKFLKFVTGCSRGPLLGFKYLEPCFCIQRAAGNANEEALDRLPTSATCMNLLKLPPYRSKEQLANKLLYAINADAGFDLS 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28635377 28648190 + MELO3C021252.2.1 Cme11g02100 342763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02100 1028 ProSiteProfiles HECT domain profile. 697 1028 IPR000569 GO:0004842
Cme11g02100 1028 SMART hect_3 695 1028 IPR000569 GO:0004842
Cme11g02100 1028 CDD HECTc 676 1026 IPR000569 GO:0004842
Cme11g02100 1028 Gene3D Hect, E3 ligase catalytic domains 647 899 - -
Cme11g02100 1028 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 1 780 IPR044611 GO:0000209|GO:0061630
Cme11g02100 1028 MobiDBLite consensus disorder prediction 1 24 - -
Cme11g02100 1028 Gene3D Hect, E3 ligase catalytic domain 797 861 - -
Cme11g02100 1028 PANTHER BNAC01G43970D PROTEIN 807 1028 - -
Cme11g02100 1028 Pfam HECT-domain (ubiquitin-transferase) 799 1028 IPR000569 GO:0004842
Cme11g02100 1028 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 807 1028 IPR044611 GO:0000209|GO:0061630
Cme11g02100 1028 SUPERFAMILY Hect, E3 ligase catalytic domain 671 1020 IPR035983 GO:0004842
Cme11g02100 1028 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Cme11g02100 1028 PANTHER BNAC01G43970D PROTEIN 1 780 - -
Cme11g02100 1028 Gene3D Hect, E3 ligase catalytic domain 902 1027 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02100 K10589 UBE3C; ubiquitin-protein ligase E3 C [EC:2.3.2.26] - csv:101218340 1915.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02452 Cme-Chr4:31100724 Cme11g02100 Cme-Chr11:28635377 4.40E-74 dispersed
Cme08g00451 Cme-Chr8:2747617 Cme11g02100 Cme-Chr11:28635377 1.34E-22 dispersed
Cme11g00383 Cme-Chr11:3855221 Cme11g02100 Cme-Chr11:28635377 2.52E-17 dispersed
Cme11g00700 Cme-Chr11:8280217 Cme11g02100 Cme-Chr11:28635377 3.19E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g27 Blo01g00043 . . Bda08g00320 . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 . . . . . Csa06g01841 Chy11g01595 . . . . . Bpe05g00808 . . . Sed09g0619 . . . Cma17g00387 . Car17g00357 Cpe12g00338 . Bhi12g01956 Tan06g2787 Cmetu11g1561 . Hepe03g0028 . Lcy12g0884 . . . . . . . Lsi09g01511 . . Cme11g02100
Vvi5g213 Blo01g00043 . . . . . . Bma05g01010 . Cmo17g00376 . . . . . . . . . . . . . . Cla06g00408 Cam06g0430 Cec06g0437 Cco06g0436 Clacu06g0416 Cmu06g0416 Cre06g1196 Cone14ag0699 . . . . . . . . . . . Bpe05g00808 . . . . . . . Cma17g00387 . Car17g00357 . . . . . . . . . . . . . . . . . . . Cme11g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010669 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 0 1 1 1 1 1 1 2 1 1 31