Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02106 ATGGTAGCCGAAGCTGAGATCAAATGCCCGAAATCCCTTCCTCTTATGAAAATCAACTACCATCTTCGCGTTACCGATGATCGCGATCTTCAGATCGATTTGCCGCACCCTTCTTCCTCACCTGTCTTTTCCCAGGCAGTTAGTTGTTCGGATATTGTTGAAGATGTGCATATAAAATCAGCTGCCATAGATTTTGTTCCAAACATTCGGTCTGGTAGCTATGCAGACATTGGAGCTCGGGATTCTATGGATGATGAACATGTCTGCATAGATGATCTGTCTGCCCATCTCCGATCTATGTTCAAATGTTCTATGCCTAAAGGTTTCTATGCCGTATTTGATGGTCATGGAGGACCTCATGCAGCTGCTTTTGTCAAGAGGAATGTCTTGAGACTATTCTTTGAAGATGCCGATTGGTTAAAAATGCAGGACATTGATTCTATTTCCCTGAAAGATTTGGAGAACTCTCATCGCAAGGCATTCCAACTGGCAGATCTTGCCTTGGCTGACGAACAAAGTGTTAGCAGCTCGTGTGGGACAACTGCATTGACGGCATTGGTTCTTGGGAGGCATTTGCTTGTTGCAAATGCTGGTGACTGCCGAGCAGTCCTATGTAGGAAAGGTATAGCAGTCCCAATGTCTGAAGATCACAGACCTTCTAATTTACTCGAGCTCAAGCGAGTGGAGGGAATGGGCGGGTTTGTAGACGACGGGTATGTTAATGGCTATATTTCAGTAACCAGGACCTTAGGGGATTGGGACCTGAAATTGCCAAATGTCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATATTAACAAACGACGATGAGTTCTTGATTCTTGGCTGTGATGGGATTTGGGATGTTATGTCGAGCCAATATGCTGTAAGTCTCGTTCGACGTGGGTTGAGGAAGCACAACGACCCTCATCAAAGTTCCCAAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTTACTGCAATCGTTATCTGCTTTTCTTCTTCCAGCTGTGCTCCTCAGCCGCGAATATGCAAGTCTTGTAATCTGACAGAAGATGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 45.04 MVAEAEIKCPKSLPLMKINYHLRVTDDRDLQIDLPHPSSSPVFSQAVSCSDIVEDVHIKSAAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPKGFYAVFDGHGGPHAAAFVKRNVLRLFFEDADWLKMQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGIAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLPNVSSSPLIAEPQVEHVILTNDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVQEALRLNTSDNLTAIVICFSSSSCAPQPRICKSCNLTEDATNRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28685305 28688374 - MELO3C021246.2.1 Cme11g02106 342769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02106 372 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 356 - -
Cme11g02106 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cme11g02106 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Cme11g02106 372 SMART PP2C_4 60 338 IPR001932 -
Cme11g02106 372 PANTHER PROTEIN PHOSPHATASE 2C 1 356 IPR015655 GO:0004722|GO:0006470
Cme11g02106 372 SUPERFAMILY PP2C-like 63 341 IPR036457 -
Cme11g02106 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cme11g02106 372 Gene3D - 54 345 IPR036457 -
Cme11g02106 372 CDD PP2Cc 69 340 IPR001932 -
Cme11g02106 372 SMART PP2C_SIG_2 85 340 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02385 Cme-Chr1:32216538 Cme11g02106 Cme-Chr11:28685305 5.04E-133 dispersed
Cme07g00041 Cme-Chr7:257040 Cme11g02106 Cme-Chr11:28685305 9.80E-99 dispersed
Cme11g02106 Cme-Chr11:28685305 Cme07g00150 Cme-Chr7:961248 3.73E-42 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42244 PF00481 PP2C 1.80E-65 CL0238 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02106 K14803 - csv:101207477 735.332