Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02117 ATGGCACCTGATCTAAACACAACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAATCTTGGTGGGGGTGTTTATTGTAATAGTCCTTGTGGTTCTATCAATATGTGTGGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGGATGCTTCCTCTCAACCGTATTTCCATTGCGTCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTTCAGCAATCCAGCACGGCTCCATCCCCCACGATGGATTCGACACGGAATCGGAAAAAGTTCTTTTGTATTCGAACAAGGCATATAATTACAGCATATCAAGCTCAGTTGATAACACAGAGATATATGCTATTGGCTCTGGAGAAGGAAGCAAGGAAGCAAGTGTTTTGCATAGACCTTCAGATTCAATACCACCGGATCCTTCGCCACTCGCCGGTCTGCCAGAATTCTCACAACTGGGATGGGGTCACTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCAGTTTGCAAATGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTAATCAATGGGACACCTGTGGCTGTCAAGAAACTTTTAAATGTAGGACAAGCGGAAAGGGAATTCAAGGTGGAAGTAGAAGCGTTTGGGCATGTGCGACACAAGAACTTAGTTCGGCTGCTGGGATACTGCATTGAAGGAACACATAGGATGCTAGTATATGAGTATGTAGATAATGGAAATCTAGAGCAGTGGCTTCATGGAGCTCTATGTCATCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGGACTGCTAAGGCATTGGCATATTTGCATGAGGCAATCGAGCCAAAAATCGTGCATCGAGATATCAAGGCGAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTTGGGCTAGCTAAATTACTCGGTTCTGGGAAGAGTCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGACTTCTAAATGAGAAGAGTGATGTTTATAGTTTTGGAGTGGTCCTTTTGGAAGCAATTACTGGAAGAGACCCCGTCGATTATGGTCGCCCAACACACGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTGGGAAGCAAACGGTCAGAAGAGGTGGTAGATCCAAATATAGAGAGAAAACCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCTCGCATGCTTGAGTCTGAAGAATATCCAATTCGTCGACAGGACCGAAGACCCAGAAAGGGCCATGCTACTGCGACCAAAAAGGAAGCTGAGAAACAGGAGAGAGGACCAAGACGACACAGATAA 1446 43.78 MAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVSAIQHGSIPHDGFDTESEKVLLYSNKAYNYSISSSVDNTEIYAIGSGEGSKEASVLHRPSDSIPPDPSPLAGLPEFSQLGWGHWFTLRDLELATMQFANDNIIGEGGYGVVYRGHLINGTPVAVKKLLNVGQAEREFKVEVEAFGHVRHKNLVRLLGYCIEGTHRMLVYEYVDNGNLEQWLHGALCHHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGSGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPNIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIRRQDRRPRKGHATATKKEAEKQERGPRRHR 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28760979 28764191 - MELO3C021233.2.1 Cme11g02117 342780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02117 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Cme11g02117 481 MobiDBLite consensus disorder prediction 431 481 - -
Cme11g02117 481 Gene3D Phosphorylase Kinase; domain 1 155 248 - -
Cme11g02117 481 MobiDBLite consensus disorder prediction 462 481 - -
Cme11g02117 481 Gene3D Transferase(Phosphotransferase) domain 1 249 459 - -
Cme11g02117 481 SMART serkin_6 174 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02117 481 MobiDBLite consensus disorder prediction 431 455 - -
Cme11g02117 481 SUPERFAMILY Protein kinase-like (PK-like) 158 451 IPR011009 -
Cme11g02117 481 PANTHER OS01G0323000 PROTEIN 2 474 - -
Cme11g02117 481 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 2 474 - -
Cme11g02117 481 CDD STKc_IRAK 180 445 - -
Cme11g02117 481 Pfam Protein kinase domain 176 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02117 481 ProSitePatterns Protein kinases ATP-binding region signature. 180 203 IPR017441 GO:0005524
Cme11g02117 481 ProSiteProfiles Protein kinase domain profile. 174 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01574 Cme-Chr11:23333440 Cme11g02117 Cme-Chr11:28760979 0 dispersed
Cme11g02117 Cme-Chr11:28760979 Cme10g00523 Cme-Chr10:3371185 4.41E-88 dispersed
Cme11g02117 Cme-Chr11:28760979 Cme01g01543 Cme-Chr1:20540304 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65275 PF00069 Pkinase 3.00E-48 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02117 - - csv:101204202 907.516