Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02121 | ATGCGATTGGGGAAGTATGAGATTGGAAAAACTCTTGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTGATTTTGAAACTCAACAACCTTTTGCTGTCAAAGAACTCGATAAGACCAAGATCATTGATCTTAACATTACTCATCAGTTTAAAAGGGAAATTTACACACTCAAACTTCTCAAGCATCCAAACATAGTGAGGCTACATGAGGTATTAGCTAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTCAACGGTGGAGAATTGTTTGATACAATCTCATCTAAGGGAAGGTTATCTGAAACTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGTCACCGGAAAGGCGTTTACCATAGAGATCTTAAGCTGGAGAACATACTTATTGATGCGAATGGAAACGTTAAGATAACTGACTTTGGCCTAAGTGCTTTACCGGACCATTTTAGGGATGATGGTTTGCTTCACACAACTTGTGGAAGCCCAAACTATGTGGCACCAGAGGTTCTTGCTAATAGAGGATATGATGGTGCAGCCTCAGATATATGGTCTTGTGGTGTTATCTTGTTTGTTATTCTCACTGGATCTCTTCCTTTTGATGATAGAAATTTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCATCTACCAAAGTGGCTATCACCAGGAGCCAAAAATTTGATAAGAAGGATTCTTGATCCTAACCCTAAGTCTAGAATAACAATGGCATCTATCAAAATGGATGATTGGTTTAGAAAGGATTATCATCCGGTCTATCTTGAGGATGAAGAAGATACACACATGACTAATGAAGCTCTATCCTTTTCCATGCATGAAGTGCCATCTTATCTCGAGGAAAAGTGTTCAGAATCTCCCACAACTATAAATGCTTTTCAACTCATTGGAATGTCTTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGAAAGGTTAGATTTACCACCATTAATCACTCTACAAAAGAAGATATCCTCAAGCGGATGGAGGATGTTGTAACCGATATGGGGTTTCTTGTCCAGAAGAAACAGAGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTATGGCCACCATACTTTCAATATTAGCAGAGGTTTTTGAGATAAGTCCATCCTTATATGGTGTAGAATTAAGAAAGCTGAATGGAGATTTATCTTCGTATCGACAGTTGTGTAAAATATTATCTAGTGATTTGGGCATCCCCTCCAGCTGCCAAGACTCTCGGTGA | 1302 | 38.48 | MRLGKYEIGKTLGHGNFGKVKFAIDFETQQPFAVKELDKTKIIDLNITHQFKREIYTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFDTISSKGRLSETQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILIDANGNVKITDFGLSALPDHFRDDGLLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIHLPKWLSPGAKNLIRRILDPNPKSRITMASIKMDDWFRKDYHPVYLEDEEDTHMTNEALSFSMHEVPSYLEEKCSESPTTINAFQLIGMSSCLDLSGFFEKEDISERKVRFTTINHSTKEDILKRMEDVVTDMGFLVQKKQRRLKVMREEKGENGMATILSILAEVFEISPSLYGVELRKLNGDLSSYRQLCKILSSDLGIPSSCQDSR | 433 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 28789254 | 28796272 | - | MELO3C021231.2.1 | Cme11g02121 | 342784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02121 | 433 | ProSiteProfiles | NAF domain profile. | 300 | 324 | IPR018451 | GO:0007165 | |
Cme11g02121 | 433 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 288 | - | - | |
Cme11g02121 | 433 | CDD | CIPK_C | 306 | 423 | - | - | |
Cme11g02121 | 433 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02121 | 433 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02121 | 433 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 3 | 429 | - | - | |
Cme11g02121 | 433 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme11g02121 | 433 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 85 | - | - | |
Cme11g02121 | 433 | Pfam | NAF domain | 302 | 363 | IPR004041 | GO:0007165 | |
Cme11g02121 | 433 | Gene3D | Kinase associated domain 1, KA1 | 299 | 425 | - | - | |
Cme11g02121 | 433 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524 | |
Cme11g02121 | 433 | PANTHER | SERINE/THREONINE KINASE | 3 | 429 | - | - | |
Cme11g02121 | 433 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 299 | IPR011009 | - | |
Cme11g02121 | 433 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme06g00839 | Cme-Chr6:5720642 | Cme11g02121 | Cme-Chr11:28789254 | 0 | dispersed | |
Cme11g02121 | Cme-Chr11:28789254 | Cme05g00043 | Cme-Chr5:306287 | 3.49E-146 | dispersed | |
Cme11g02119 | Cme-Chr11:28778672 | Cme11g02121 | Cme-Chr11:28789254 | 6.45E-51 | proximal | |
Cme11g02120 | Cme-Chr11:28786212 | Cme11g02121 | Cme-Chr11:28789254 | 2.39E-20 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65277 | PF00069 | Pkinase | 1.50E-73 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02121 | K07198 | - | csv:101206030 | 788.489 |