Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02121 ATGCGATTGGGGAAGTATGAGATTGGAAAAACTCTTGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTGATTTTGAAACTCAACAACCTTTTGCTGTCAAAGAACTCGATAAGACCAAGATCATTGATCTTAACATTACTCATCAGTTTAAAAGGGAAATTTACACACTCAAACTTCTCAAGCATCCAAACATAGTGAGGCTACATGAGGTATTAGCTAGTAAAAGCAAAATTTACATGGTTCTTGAGTACGTCAACGGTGGAGAATTGTTTGATACAATCTCATCTAAGGGAAGGTTATCTGAAACTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGTCACCGGAAAGGCGTTTACCATAGAGATCTTAAGCTGGAGAACATACTTATTGATGCGAATGGAAACGTTAAGATAACTGACTTTGGCCTAAGTGCTTTACCGGACCATTTTAGGGATGATGGTTTGCTTCACACAACTTGTGGAAGCCCAAACTATGTGGCACCAGAGGTTCTTGCTAATAGAGGATATGATGGTGCAGCCTCAGATATATGGTCTTGTGGTGTTATCTTGTTTGTTATTCTCACTGGATCTCTTCCTTTTGATGATAGAAATTTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCATCTACCAAAGTGGCTATCACCAGGAGCCAAAAATTTGATAAGAAGGATTCTTGATCCTAACCCTAAGTCTAGAATAACAATGGCATCTATCAAAATGGATGATTGGTTTAGAAAGGATTATCATCCGGTCTATCTTGAGGATGAAGAAGATACACACATGACTAATGAAGCTCTATCCTTTTCCATGCATGAAGTGCCATCTTATCTCGAGGAAAAGTGTTCAGAATCTCCCACAACTATAAATGCTTTTCAACTCATTGGAATGTCTTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGAAAGGTTAGATTTACCACCATTAATCACTCTACAAAAGAAGATATCCTCAAGCGGATGGAGGATGTTGTAACCGATATGGGGTTTCTTGTCCAGAAGAAACAGAGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTATGGCCACCATACTTTCAATATTAGCAGAGGTTTTTGAGATAAGTCCATCCTTATATGGTGTAGAATTAAGAAAGCTGAATGGAGATTTATCTTCGTATCGACAGTTGTGTAAAATATTATCTAGTGATTTGGGCATCCCCTCCAGCTGCCAAGACTCTCGGTGA 1302 38.48 MRLGKYEIGKTLGHGNFGKVKFAIDFETQQPFAVKELDKTKIIDLNITHQFKREIYTLKLLKHPNIVRLHEVLASKSKIYMVLEYVNGGELFDTISSKGRLSETQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILIDANGNVKITDFGLSALPDHFRDDGLLHTTCGSPNYVAPEVLANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIHLPKWLSPGAKNLIRRILDPNPKSRITMASIKMDDWFRKDYHPVYLEDEEDTHMTNEALSFSMHEVPSYLEEKCSESPTTINAFQLIGMSSCLDLSGFFEKEDISERKVRFTTINHSTKEDILKRMEDVVTDMGFLVQKKQRRLKVMREEKGENGMATILSILAEVFEISPSLYGVELRKLNGDLSSYRQLCKILSSDLGIPSSCQDSR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28789254 28796272 - MELO3C021231.2.1 Cme11g02121 342784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02121 433 ProSiteProfiles NAF domain profile. 300 324 IPR018451 GO:0007165
Cme11g02121 433 Gene3D Transferase(Phosphotransferase) domain 1 86 288 - -
Cme11g02121 433 CDD CIPK_C 306 423 - -
Cme11g02121 433 SMART serkin_6 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02121 433 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02121 433 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 3 429 - -
Cme11g02121 433 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02121 433 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Cme11g02121 433 Pfam NAF domain 302 363 IPR004041 GO:0007165
Cme11g02121 433 Gene3D Kinase associated domain 1, KA1 299 425 - -
Cme11g02121 433 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
Cme11g02121 433 PANTHER SERINE/THREONINE KINASE 3 429 - -
Cme11g02121 433 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cme11g02121 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00839 Cme-Chr6:5720642 Cme11g02121 Cme-Chr11:28789254 0 dispersed
Cme11g02121 Cme-Chr11:28789254 Cme05g00043 Cme-Chr5:306287 3.49E-146 dispersed
Cme11g02119 Cme-Chr11:28778672 Cme11g02121 Cme-Chr11:28789254 6.45E-51 proximal
Cme11g02120 Cme-Chr11:28786212 Cme11g02121 Cme-Chr11:28789254 2.39E-20 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65277 PF00069 Pkinase 1.50E-73 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02121 K07198 - csv:101206030 788.489