Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02151 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCGTTTTATATGCAGCGGGGAATTAGCAACTCTGGCTCTGGAACACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAAACCAACACTGGAGGCAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACTCTGGTATTTCACCCTATGGTGGCAATGTAGGGGCTCAATCTGGTGGAGTGGTTGCCAGCGAGCCCGTGAAACGCAAGCGAGGCCGCCCTCGCAAGTACGGAACTGAAGGGACTGTGTCTTTGGCACTCTCTCCCTCCCCTTCTGCTGTAAATCCTGCCACTGTAGCTTCATCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAATTGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAGATCATGTCATTTTCGCAGCAGGGACCTAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTTTCCACTGTTACCCTTCGTCAGCCTTCGACTTCAGGAGGCACGGTTACATACGAGGGGCGTTTTGAGATAATATGTCTGTCGGGCTCATACGCTCTTGGCGAAATTGCTGGTTCTAGGAACCGCACTGGTGGCCTTAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATTGGCGGTGGGGTAGGAGGAGCACTTGTTGCAGCAACCCCAGTTCAGGTGATAGTAGGAAGCTTCATGTGGGGTAGTTCAAAATCAAAGTACAAGAAGAGGGAAGCTATTGAAGGTGTAATCGACTCGGATCATCAGTCTGTAGATCATGCAGTTGCAATTGCGAGTGTGCAGCAGAATCAGAATCTGACTCCGATGTCCTCGGTTAGTATGTGGCCATCCTCACAGTCTCTGGACATGCGTAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.04 MDRRDPMALSGSQSFYMQRGISNSGSGTQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNSGISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAVNPATVASSPKRGRGRPPGSGKKQQLASLCETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEIAGSRNRTGGLSVSLASPDGRVIGGGVGGALVAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQSVDHAVAIASVQQNQNLTPMSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 28950150 28954711 - MELO3C021218.2.1 Cme11g02151 342814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02151 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Cme11g02151 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677
Cme11g02151 334 MobiDBLite consensus disorder prediction 11 56 - -
Cme11g02151 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 IPR039605 GO:0003680
Cme11g02151 334 Gene3D - 151 284 - -
Cme11g02151 334 CDD DUF296 150 239 IPR005175 -
Cme11g02151 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cme11g02151 334 MobiDBLite consensus disorder prediction 98 114 - -
Cme11g02151 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cme11g02151 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677
Cme11g02151 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Cme11g02151 334 MobiDBLite consensus disorder prediction 1 134 - -
Cme11g02151 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 28 325 - -
Cme11g02151 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00024 Cme-Chr7:197832 Cme11g02151 Cme-Chr11:28950150 4.98E-66 dispersed
Cme09g01675 Cme-Chr9:21436169 Cme11g02151 Cme-Chr11:28950150 7.28E-65 dispersed
Cme10g01713 Cme-Chr10:23718509 Cme11g02151 Cme-Chr11:28950150 3.61E-58 dispersed
Cme11g02151 Cme-Chr11:28950150 Cme09g01755 Cme-Chr9:22028676 2.84E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02151 - - csv:101203138 626.706