Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02177 ATGGCTTCCCTTCATAGAAAGCAAGCTTATCATGCTTGCTTTCTTATTATTCTTTTCCTCTTTTTCTCTCTCCCATCTTTATATGTCTCTATCTCAGAAGTTGAAGCCTCATATCTTACTCGTCGTCAATTATTGACTCTAAAACAACATGATGAACTCCCCAATGACTTCAAATACAAACTTGACATTGCCGACACTTTTCCAAATGAGAGGTTGAAGATGGCTTATGTAGCCCTTCAAGCATGGAAATTAGCTATTTATTCCGACCCACAAAACATGACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACTGGCGTCTTCTGTGCTCCGGCGCTTGATAACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGACTTGGCTCTCTTCCATATTAACTCTAACCGATTTTGTGGGATCATTCCTTCTAGCTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCAAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGACGCCATCTTCCTAAATAACAACAGATTCAATTCTCTAATCCCTGAAACCATTGGAAATTCCACCGTCTCTGTTGTCTCCTTTGCCAACAACGAATTTCACGGCTGCATTCCTAGCACCATTGGTCAAATGTCTAACCTTAATCAAATTCTCTTCCTTGGCAACAAGCTCGGCGGCTGTTTTCCACCTGAGATCGGAAACCTTGTCAATCTCACAGTCTTCGACATTAGCAGCAATGGTTTCACAGGTCAATTGCCAGAATCCTTGTCTGGCCTCCAAAATTTGGAGATTTTGGACGTTAGCAACAATGAATTGAGGGGTTCTATCTCTGCAGGCCTTTGCAAGTTACCTAAATTGGCTAACTTCACTTTCTCCTTCAATTACTTTGATAGGCAAGATACGACGTGTGTTGCATCTAAAGGATCAAAGAAGGTCTTTAATGATGGTCAAAATTGTTTGGCAAATCGACCAGTGCAAAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGAATGTGGCAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTGCCGTCGACTCCTGAGGATCCATATGATCAGTCTCCATCACCAAGATATAGATCTCCACCACCTCCAGAGGTCACCCCACCATCTCCAAGTGAGACCTCTGTTCCATCGTCACCACCCTCTCCAGTTGAGTCTTCACCACCAACCTCAACTCCATCCTCATCACCTACCATTGAAACACCTACTTCATCTCCAGCTGAATCTCCCCTACCACCACCATCACCAATCTATTCCTCTCCACCGCCACCACCTATCCACTCTCCTCCACCCCCTGTTCACTCACCACCACCACCGGTCTCCTCTCCTCCACCTCCTGTTCACTCACCACCACCACCAGTTTCCTCTCCTCCACCACCGATTCACTCTCCACCTCCACCAGTTCACTCCCCACCTCCACCGGTTCACTCCCCTCCTCCACCGATTCACTCCCCACCTCCACCTATTCACTCTCCACCACCCCCCGTCTACTCTCCTCCCCCACCAGTTCATTCCCCACCACCGCCTGTCTACTCTCCACCCCCACCAGTCTATTCCCCACCACCGCCTGTCTACTCTCCACCCCCACCAGTCTACTCTCCTCCACCACCAGTCCTCTCTCCACCTCCACCCATCTACTCTCCACCACCACCACCTGTTTACTCCCCACCGCCACCTGTTCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCCCTCTTCCAATTCTTCACCACCACCATCATTTGAAGACGTGATCCTCCCACCAAATATCGGCTTCCAATATACATCACCGCCTCCACCAATGTTCCCCGGTTATTGA 2010 48.41 MASLHRKQAYHACFLIILFLFFSLPSLYVSISEVEASYLTRRQLLTLKQHDELPNDFKYKLDIADTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLGGCFPPEIGNLVNLTVFDISSNGFTGQLPESLSGLQNLEILDVSNNELRGSISAGLCKLPKLANFTFSFNYFDRQDTTCVASKGSKKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGGGSSSPGVPSTPEDPYDQSPSPRYRSPPPPEVTPPSPSETSVPSSPPSPVESSPPTSTPSSSPTIETPTSSPAESPLPPPSPIYSSPPPPPIHSPPPPVHSPPPPVSSPPPPVHSPPPPVSSPPPPIHSPPPPVHSPPPPVHSPPPPIHSPPPPIHSPPPPVYSPPPPVHSPPPPVYSPPPPVYSPPPPVYSPPPPVYSPPPPVLSPPPPIYSPPPPPVYSPPPPVQSPPPPTASPPPPSSNSSPPPSFEDVILPPNIGFQYTSPPPPMFPGY 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29123538 29130783 - MELO3C021193.2.1 Cme11g02177 342840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02177 669 MobiDBLite consensus disorder prediction 468 574 - -
Cme11g02177 669 MobiDBLite consensus disorder prediction 612 648 - -
Cme11g02177 669 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 11 570 - -
Cme11g02177 669 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 560 664 - -
Cme11g02177 669 Pfam Leucine Rich Repeat 311 333 IPR001611 GO:0005515
Cme11g02177 669 MobiDBLite consensus disorder prediction 393 574 - -
Cme11g02177 669 MobiDBLite consensus disorder prediction 394 408 - -
Cme11g02177 669 MobiDBLite consensus disorder prediction 409 452 - -
Cme11g02177 669 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 11 570 - -
Cme11g02177 669 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 560 664 - -
Cme11g02177 669 MobiDBLite consensus disorder prediction 612 669 - -
Cme11g02177 669 Gene3D Ribonuclease Inhibitor 238 360 IPR032675 -
Cme11g02177 669 MobiDBLite consensus disorder prediction 453 467 - -
Cme11g02177 669 SUPERFAMILY L domain-like 85 350 - -
Cme11g02177 669 PRINTS Pistil-specific extensin-like signature 446 469 IPR003882 -
Cme11g02177 669 PRINTS Pistil-specific extensin-like signature 481 499 IPR003882 -
Cme11g02177 669 Gene3D Ribonuclease Inhibitor 75 237 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02177 Cme-Chr11:29123538 Cme11g02179 Cme-Chr11:29128849 0 dispersed
Cme11g02177 Cme-Chr11:29123538 Cme11g02178 Cme-Chr11:29123538 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02177 - - csv:101221370 742.651