Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02179 CTTATTATTCTTTTCCTCTTTTTCTCTCTCCCATCTTTATATGTCTCTATCTCAGAAGTTGAAGCCTCATATCTTACTCGTCGTCAATTATTGACTCTAAAACAACATGATGAACTCCCCAATGACTTCAAATACAAACTTGACATTGCCGACACTTTTCCAAATGAGAGGTTGAAGATGGCTTATGTAGCCCTTCAAGCATGGAAATTAGCTATTTATTCCGACCCACAAAACATGACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACTGGCGTCTTCTGTGCTCCGGCGCTTGATAACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGACTTGGCTCTCTTCCATATTAACTCTAACCGATTTTGTGGGATCATTCCTTCTAGCTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCAAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGACGCCATCTTCCTAAATAACAACAGATTCAATTCTCTAATCCCTGAAACCATTGGAAATTCCACCGTCTCTGTTGTCTCCTTTGCCAACAACGAATTTCACGGCTGCATTCCTAGCACCATTGGTCAAATGTCTAACCTTAATCAAATTCTCTTCCTTGGCAACAAGCTCGGCGGCTGTTTTCCACCTGAGATCGGAAACCTTGTCAATCTCACAGTCTTCGACATTAGCAGCAATGGTTTCACAGGTCAATTGCCAGAATCCTTGTCTGGCCTCCAAAATTTGGAGATTTTGGACGTTAGCAACAATGAATTGAGGGGTTCTATCTCTGCAGGCCTTTGCAAGTTACCTAAATTGGCTAACTTCACTTTCTCCTTCAATTACTTTGATAGGCAAGATACGACGTGTGTTGCATCTAAAGGATCAAAGAAGGTCTTTAATGATGGTCAAAATTGTTTGGCAAATCGACCAGTGCAAAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTAGAATGTGGCAATTGTGGTGGTGGGTCAAGTTCTCCCGGTGTGCCGTCGACTCCTGAGGATCCATATGATCAGTCTCCATCACCAAGATACAGATCTCCACCACCTCCGGTAGTCACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCACCACCACCAGTCTCCTCTCCTCCACCTCCTGTTCATTCACCACCACCCCCAGTCCACTCCCCACCTCCACCGGTTCACTCCCCACCTCCACCGGTTCACTCTCCACCTCCACCGGTTCACTCCCCACCTCCACCGGTTTACTCCCCACCACCTCCACCGGTCCACTCCCCACCACCTCCCATCCACTCCCCACCCCCACCAGTCCACTCCCCACCCCCACCGTCTATTCTCCGCCTCCACCTGTCTACTCCCCTCCACCACCAGTTCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCTTGACTCTTCACCACCACCATCATTTGAAGATGTGA 1617 47.68 LIILFLFFSLPSLYVSISEVEASYLTRRQLLTLKQHDELPNDFKYKLDIADTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLGGCFPPEIGNLVNLTVFDISSNGFTGQLPESLSGLQNLEILDVSNNELRGSISAGLCKLPKLANFTFSFNYFDRQDTTCVASKGSKKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGGGSSSPGVPSTPEDPYDQSPSPRYRSPPPPVVTPPSPSETSVPSPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPVHSPPPPIHSPPPPVHSPPPPSILRLHLSTPLHHQFNLHHLRLHLLLLLTLHHHHHLKM 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29128849 29130741 - MELO3C021194.2.1 Cme11g02179 342842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02179 538 MobiDBLite consensus disorder prediction 379 498 - -
Cme11g02179 538 MobiDBLite consensus disorder prediction 395 498 - -
Cme11g02179 538 SUPERFAMILY L domain-like 71 336 - -
Cme11g02179 538 Gene3D Ribonuclease Inhibitor 225 347 IPR032675 -
Cme11g02179 538 Pfam Leucine rich repeat N-terminal domain 64 96 IPR013210 -
Cme11g02179 538 Gene3D Ribonuclease Inhibitor 61 224 IPR032675 -
Cme11g02179 538 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 3 500 - -
Cme11g02179 538 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 500 - -
Cme11g02179 538 MobiDBLite consensus disorder prediction 380 394 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 384 405 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 432 449 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 450 475 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 412 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02179 - - - csv:101221370 721.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02177 Cme-Chr11:29123538 Cme11g02179 Cme-Chr11:29128849 0 dispersed
Cme11g02179 Cme-Chr11:29128849 Cme05g01968 Cme-Chr5:28235872 5.86E-130 dispersed
Cme11g02178 Cme-Chr11:29123538 Cme11g02179 Cme-Chr11:29128849 0 tandem
Cme11g02179 Cme-Chr11:29128849 Cme11g02180 Cme-Chr11:29136990 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01968 CCT 72 240 Leucine-rich Repeat extension Gene Families AT1G62440 72.2 2.6e-44 177.6
Cme02g01330 CCT 54 224 Leucine-rich Repeat extension Gene Families AT1G62440 70.2 1.2e-41 168.7
Cme02g01330 CCT 18 396 Leucine-rich Repeat extension Gene Families AT4G13340 76.1 6.5e-69 259.2
Cme05g01968 CCT 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 2.0e-65 247.7
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 1.7e-40 164.9
Cme11g02177 . 14 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 1.7e-40 164.9
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 2.2e-40 164.5
Cme11g02180 . 11 222 Leucine-rich Repeat extension Gene Families AT4G13340 55.7 2.2e-40 164.5
Cme11g02178 . 38 225 Leucine-rich Repeat extension Gene Families AT4G13340 57.4 3.5e-38 157.1
Cme05g01968 CCT 47 419 Leucine-rich Repeat extension Gene Families AT3G24480 75.5 1.4e-75 280.8
Cme02g01330 CCT 27 391 Leucine-rich Repeat extension Gene Families AT3G24480 76.8 7.5e-74 275.0
Cme06g00581 . 30 361 Leucine-rich Repeat extension Gene Families AT3G24480 55.5 3.2e-40 163.3
Cme11g02180 . 23 397 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.1e-40 162.9
Cme11g02177 . 31 225 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02179 . 17 211 Leucine-rich Repeat extension Gene Families AT3G24480 52.6 1.2e-39 161.4
Cme11g02178 . 38 400 Leucine-rich Repeat extension Gene Families AT3G24480 51.5 5.0e-38 156.0
Cme06g00581 . 32 366 Leucine-rich Repeat extension Gene Families AT3G22800 71.7 6.4e-59 225.3
Cme01g00299 . 39 371 Leucine-rich Repeat extension Gene Families AT3G22800 60.8 2.5e-39 160.2
Cme02g01330 CCT 64 392 Leucine-rich Repeat extension Gene Families AT3G22800 62.8 9.7e-39 158.3
Cme06g00581 . 20 362 Leucine-rich Repeat extension Gene Families AT5G25550 65.5 1.9e-41 167.2
Cme02g01330 CCT 38 396 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 3.6e-40 162.9
Cme05g01968 CCT 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 60.8 6.8e-39 158.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92