Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02179 CTTATTATTCTTTTCCTCTTTTTCTCTCTCCCATCTTTATATGTCTCTATCTCAGAAGTTGAAGCCTCATATCTTACTCGTCGTCAATTATTGACTCTAAAACAACATGATGAACTCCCCAATGACTTCAAATACAAACTTGACATTGCCGACACTTTTCCAAATGAGAGGTTGAAGATGGCTTATGTAGCCCTTCAAGCATGGAAATTAGCTATTTATTCCGACCCACAAAACATGACTGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACTGGCGTCTTCTGTGCTCCGGCGCTTGATAACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGACTTGGCTCTCTTCCATATTAACTCTAACCGATTTTGTGGGATCATTCCTTCTAGCTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTCCTCGAATGGCCAAGTGCGAAGTACCTCGATCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACTAAGGAGTTCGACGCCATCTTCCTAAATAACAACAGATTCAATTCTCTAATCCCTGAAACCATTGGAAATTCCACCGTCTCTGTTGTCTCCTTTGCCAACAACGAATTTCACGGCTGCATTCCTAGCACCATTGGTCAAATGTCTAACCTTAATCAAATTCTCTTCCTTGGCAACAAGCTCGGCGGCTGTTTTCCACCTGAGATCGGAAACCTTGTCAATCTCACAGTCTTCGACATTAGCAGCAATGGTTTCACAGGTCAATTGCCAGAATCCTTGTCTGGCCTCCAAAATTTGGAGATTTTGGACGTTAGCAACAATGAATTGAGGGGTTCTATCTCTGCAGGCCTTTGCAAGTTACCTAAATTGGCTAACTTCACTTTCTCCTTCAATTACTTTGATAGGCAAGATACGACGTGTGTTGCATCTAAAGGATCAAAGAAGGTCTTTAATGATGGTCAAAATTGTTTGGCAAATCGACCAGTGCAAAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTAGAATGTGGCAATTGTGGTGGTGGGTCAAGTTCTCCCGGTGTGCCGTCGACTCCTGAGGATCCATATGATCAGTCTCCATCACCAAGATACAGATCTCCACCACCTCCGGTAGTCACTCCACCATCTCCAAGTGAGACCTCTGTTCCATCACCACCACCAGTCTCCTCTCCTCCACCTCCTGTTCATTCACCACCACCCCCAGTCCACTCCCCACCTCCACCGGTTCACTCCCCACCTCCACCGGTTCACTCTCCACCTCCACCGGTTCACTCCCCACCTCCACCGGTTTACTCCCCACCACCTCCACCGGTCCACTCCCCACCACCTCCCATCCACTCCCCACCCCCACCAGTCCACTCCCCACCCCCACCGTCTATTCTCCGCCTCCACCTGTCTACTCCCCTCCACCACCAGTTCAATCTCCACCACCTCCGACTGCATCTCCTCCTCCTCTTGACTCTTCACCACCACCATCATTTGAAGATGTGA 1617 47.68 LIILFLFFSLPSLYVSISEVEASYLTRRQLLTLKQHDELPNDFKYKLDIADTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGVFCAPALDNPNIEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFNSLIPETIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFLGNKLGGCFPPEIGNLVNLTVFDISSNGFTGQLPESLSGLQNLEILDVSNNELRGSISAGLCKLPKLANFTFSFNYFDRQDTTCVASKGSKKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGGGSSSPGVPSTPEDPYDQSPSPRYRSPPPPVVTPPSPSETSVPSPPPVSSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVYSPPPPPVHSPPPPIHSPPPPVHSPPPPSILRLHLSTPLHHQFNLHHLRLHLLLLLTLHHHHHLKM 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29128849 29130741 - MELO3C021194.2.1 Cme11g02179 342842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02179 538 MobiDBLite consensus disorder prediction 379 498 - -
Cme11g02179 538 MobiDBLite consensus disorder prediction 395 498 - -
Cme11g02179 538 SUPERFAMILY L domain-like 71 336 - -
Cme11g02179 538 Gene3D Ribonuclease Inhibitor 225 347 IPR032675 -
Cme11g02179 538 Pfam Leucine rich repeat N-terminal domain 64 96 IPR013210 -
Cme11g02179 538 Gene3D Ribonuclease Inhibitor 61 224 IPR032675 -
Cme11g02179 538 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 2 3 500 - -
Cme11g02179 538 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 500 - -
Cme11g02179 538 MobiDBLite consensus disorder prediction 380 394 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 384 405 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 432 449 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 450 475 - -
Cme11g02179 538 PRINTS Proline rich extensin signature 412 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02177 Cme-Chr11:29123538 Cme11g02179 Cme-Chr11:29128849 0 dispersed
Cme11g02179 Cme-Chr11:29128849 Cme05g01968 Cme-Chr5:28235872 5.86E-130 dispersed
Cme11g02178 Cme-Chr11:29123538 Cme11g02179 Cme-Chr11:29128849 0 tandem
Cme11g02179 Cme-Chr11:29128849 Cme11g02180 Cme-Chr11:29136990 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02179 - - csv:101221370 721.465