Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02180 CTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTTATTATTCTTTTTCTCTTCTTCTCTCTCCCATCTATCTCTGTCTCTATCTCAGAAGTTGAAGCTTCATATCTTATTCGTCGTCAACTATTGACTCTAAAACAACATGATGAACTCCCCAATGACTACAAATACAAACTTGACATTGCTGACACTTTTCCAAACGAGAGGTTGAAGATGGCTTATGTAGCCCTTCAAGCATGGAAATTAGCTATTTATTCCGACCCACAAAACATGACTGCCAATTGGGTTGGTGTTGATGTTTGTTCTTACACCGGCGTCTTCTGTGCTCCGGCGCTTGATAACCCAAACATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTACTTGCCTCCGGAACTTGGGCTTTTGACCGACTTGGCTCTCTTCCATATTAACTCTAATCGATTTTGTGGGATCATTCCTTCTAGCTTCTCCAAGCTTGTACTCATGTTTGAGTTTGATGTCAGTAACAACCGCTTCGTTGGCCATTTTCCTCTCGTTGTTCTGGAATGGCCGAGTGCGAAGTACCTCGACCTCAGGTACAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTTGACGCCATCTTCTTAAATAACAACAGATTCAATTCTCTAATCCCTGAAACCATTGGAAATTCCACCGTGTCTGTTATCTCCTTTGCCAACAACGAATTCCACGGCTGCATTCCTAGCACCATTGGCCAAATGTCTAACCTCAATCAAATTCTCTTCCTCGGCAACAAGCTCGGCGGCTGTTTCCCACCTGAGATCGGAAACCTCGTCAATCTCACAGTCTTCGACGTCAGCAGCAATGGCTTCACAGGTCAATTGCCGGAATCCTTGTCTGGCCTCCAAAATTTGGAGATTTTGGACGTTAGCAACAATGAGTTAAGGGGCTCTGTCTCTGCAGGCCTTTGCAAGTTGCCTAAATTGGCTAACTTCACTTTCTCCTTCAATTACTTTGATGGGCAAGATACAACGTGTGTTGCATCTAAAGAATCAGAGAAGGTCTTTAATGATGGCCAAAATTGTTTGGCAAATCGACCAGTGCAAAAAGATGCAAACAAATGTAGCACTGTCTTGAAGAAATCAGTGGAATGTGGCAATTGTGGTGGTGGGTCGAGTTCTCCTGGTGTACCGTCGACTCCTGATGATCCATATGGTGAGACCTCTATTCCATCATCACCACCATCTCCAGTTGAGTCTACACCACCAACCTCGGTTCCATCCTCACCACCTATTTCATCTCTCATACCACCAGTTCACTCACCACCAACCCCAGTTTATTCCCCACCACCACCTGTCCACTCTCCTCCACCACCAGTCCATTCCCCACCACCACCGATCTCTTCTCCTCCACCACCAGTTCACTCTCCC 1443 45.67 LHRKQANHACFLIILFLFFSLPSISVSISEVEASYLIRRQLLTLKQHDELPNDYKYKLDIADTFPNERLKMAYVALQAWKLAIYSDPQNMTANWVGVDVCSYTGVFCAPALDNPNIEVVAGIDLNHGDIAGYLPPELGLLTDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPLVVLEWPSAKYLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFNSLIPETIGNSTVSVISFANNEFHGCIPSTIGQMSNLNQILFLGNKLGGCFPPEIGNLVNLTVFDVSSNGFTGQLPESLSGLQNLEILDVSNNELRGSVSAGLCKLPKLANFTFSFNYFDGQDTTCVASKESEKVFNDGQNCLANRPVQKDANKCSTVLKKSVECGNCGGGSSSPGVPSTPDDPYGETSIPSSPPSPVESTPPTSVPSSPPISSLIPPVHSPPTPVYSPPPPVHSPPPPVHSPPPPISSPPPPVHSP 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29136990 29138477 + MELO3C034935.2.1 Cme11g02180 342843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02180 481 MobiDBLite consensus disorder prediction 412 481 - -
Cme11g02180 481 PRINTS Proline rich extensin signature 449 470 - -
Cme11g02180 481 PRINTS Proline rich extensin signature 470 481 - -
Cme11g02180 481 PRINTS Proline rich extensin signature 419 435 - -
Cme11g02180 481 MobiDBLite consensus disorder prediction 391 411 - -
Cme11g02180 481 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 8 419 - -
Cme11g02180 481 Gene3D Ribonuclease Inhibitor 235 361 IPR032675 -
Cme11g02180 481 Gene3D Ribonuclease Inhibitor 73 234 IPR032675 -
Cme11g02180 481 MobiDBLite consensus disorder prediction 391 481 - -
Cme11g02180 481 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Cme11g02180 481 Pfam Leucine rich repeat N-terminal domain 75 107 IPR013210 -
Cme11g02180 481 PANTHER POLLEN-SPECIFIC LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3 8 419 - -
Cme11g02180 481 SUPERFAMILY L domain-like 82 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02178 Cme-Chr11:29123538 Cme11g02180 Cme-Chr11:29136990 0 dispersed
Cme11g02179 Cme-Chr11:29128849 Cme11g02180 Cme-Chr11:29136990 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02180 - - csv:101221370 711.835