Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02182 ATGGGCTTTCCGGTGGGTTGCACCGAAGTTTTCTTCCCCACCATATTCCTCCACCTCCTCTCCCTCCTCGACCTTCTCAAATTCCTCATCCTCTCCCTCTTCCGCCTCCTCGGCCTCCCCGAATTTCTCCCCTCCGACAATCTACCGCCTGAACTCCAATTCCCCCTCAACCCTCCCCCGTCGGCCCTCCTCCTCCGCGAACTCCTCCCGGTGGTGAAATTCTCCGATCTGCCAAACCCGCCAGAGAGATGCGCCGTTTGCCTGTACGAGTTCGAGGGGGCGGAGGAGATCCGGTGGCTAACGAATTGCAAGCACATATTCCACCGGAGGTGTCTGGACCGTTGGATGGATCATGATCACGACACGTGTCCTCTTTGTAGAACGCCGTTTGTGCCCGATGGGATGATGGATGAATTTAATCAACGGCTGTGGGCTGCCTCCGGTGTCGCCGAGACTTTCGAGACGGACTTTAACTCCGTTTTAGGATAG 489 56.85 MGFPVGCTEVFFPTIFLHLLSLLDLLKFLILSLFRLLGLPEFLPSDNLPPELQFPLNPPPSALLLRELLPVVKFSDLPNPPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCLDRWMDHDHDTCPLCRTPFVPDGMMDEFNQRLWAASGVAETFETDFNSVLG 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29147180 29147704 - MELO3C021190.2.1 Cme11g02182 342845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02182 162 PANTHER BRH1 RING FINGER PROTEIN 1 153 - -
Cme11g02182 162 SUPERFAMILY RING/U-box 70 133 - -
Cme11g02182 162 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 153 - -
Cme11g02182 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 133 IPR013083 -
Cme11g02182 162 SMART ring_2 84 126 IPR001841 -
Cme11g02182 162 ProSiteProfiles Zinc finger RING-type profile. 84 127 IPR001841 -
Cme11g02182 162 Pfam Ring finger domain 83 127 IPR001841 -
Cme11g02182 162 CDD RING-H2 84 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00800 Cme-Chr8:5325076 Cme11g02182 Cme-Chr11:29147180 3.14E-15 dispersed
Cme11g02182 Cme-Chr11:29147180 Cme05g00338 Cme-Chr5:2496624 1.59E-13 dispersed
Cme11g00985 Cme-Chr11:14036352 Cme11g02182 Cme-Chr11:29147180 4.95E-15 transposed
Cme11g02182 Cme-Chr11:29147180 Cme06g00166 Cme-Chr6:1005706 9.87E-42 wgd
Cme11g02182 Cme-Chr11:29147180 Cme09g01782 Cme-Chr9:22267005 2.21E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02182 K16281 - csv:101220424 305.834