Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme11g02182 | ATGGGCTTTCCGGTGGGTTGCACCGAAGTTTTCTTCCCCACCATATTCCTCCACCTCCTCTCCCTCCTCGACCTTCTCAAATTCCTCATCCTCTCCCTCTTCCGCCTCCTCGGCCTCCCCGAATTTCTCCCCTCCGACAATCTACCGCCTGAACTCCAATTCCCCCTCAACCCTCCCCCGTCGGCCCTCCTCCTCCGCGAACTCCTCCCGGTGGTGAAATTCTCCGATCTGCCAAACCCGCCAGAGAGATGCGCCGTTTGCCTGTACGAGTTCGAGGGGGCGGAGGAGATCCGGTGGCTAACGAATTGCAAGCACATATTCCACCGGAGGTGTCTGGACCGTTGGATGGATCATGATCACGACACGTGTCCTCTTTGTAGAACGCCGTTTGTGCCCGATGGGATGATGGATGAATTTAATCAACGGCTGTGGGCTGCCTCCGGTGTCGCCGAGACTTTCGAGACGGACTTTAACTCCGTTTTAGGATAG | 489 | 56.85 | MGFPVGCTEVFFPTIFLHLLSLLDLLKFLILSLFRLLGLPEFLPSDNLPPELQFPLNPPPSALLLRELLPVVKFSDLPNPPERCAVCLYEFEGAEEIRWLTNCKHIFHRRCLDRWMDHDHDTCPLCRTPFVPDGMMDEFNQRLWAASGVAETFETDFNSVLG | 162 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 29147180 | 29147704 | - | MELO3C021190.2.1 | Cme11g02182 | 342845 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme11g02182 | 162 | PANTHER | BRH1 RING FINGER PROTEIN | 1 | 153 | - | - | |
Cme11g02182 | 162 | SUPERFAMILY | RING/U-box | 70 | 133 | - | - | |
Cme11g02182 | 162 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 1 | 153 | - | - | |
Cme11g02182 | 162 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 133 | IPR013083 | - | |
Cme11g02182 | 162 | SMART | ring_2 | 84 | 126 | IPR001841 | - | |
Cme11g02182 | 162 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 127 | IPR001841 | - | |
Cme11g02182 | 162 | Pfam | Ring finger domain | 83 | 127 | IPR001841 | - | |
Cme11g02182 | 162 | CDD | RING-H2 | 84 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00800 | Cme-Chr8:5325076 | Cme11g02182 | Cme-Chr11:29147180 | 3.14E-15 | dispersed | |
Cme11g02182 | Cme-Chr11:29147180 | Cme05g00338 | Cme-Chr5:2496624 | 1.59E-13 | dispersed | |
Cme11g00985 | Cme-Chr11:14036352 | Cme11g02182 | Cme-Chr11:29147180 | 4.95E-15 | transposed | |
Cme11g02182 | Cme-Chr11:29147180 | Cme06g00166 | Cme-Chr6:1005706 | 9.87E-42 | wgd | |
Cme11g02182 | Cme-Chr11:29147180 | Cme09g01782 | Cme-Chr9:22267005 | 2.21E-49 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme11g02182 | K16281 | - | csv:101220424 | 305.834 |