Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02185 ATGGAGAACAGCTCTTTTTATCAGAACATCAGGGGAGAGCCCACCCATGGTGGTCAATACATTCAATACAATGTGTATGGGAATCTGTTTGAAGTTTCTAGGAAGTATACTCCACCCATCAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTGTGTGCTGCTTTGAACTCAGAAACAAATGAAGATGTTGCAATTAAGAAGGTTGGCAAGGCATTTGACAATAGAATTGATGCTAAAAGGACCTTACGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTCAGAGATATTATAAGACCTCCTCAGAGGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGACACAGATCTAAATCAGATTATACGGTCCAACCAATCATTGACTGATGACCATTGCCGGTACTTTCTGTATCAGTTGTTACGAGGGCTAAAATATGTGCATTCTGCTAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTCCTCAATGCAAATTGTGACTTAAAAATAGGAGACTTTGGCCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTTGTTACTCGGTGGTACCGTGCACCCGAATTGCTCCTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGCGAAATTATGCACAGACAACCATTGTTTCCAGGAAAAGACTATGTTCATCAGCTAAAACTTATCACTGAGCTCATTGGGTCACCAGATGAATCGAGTCTTGGATTCTTACGAAGTGACAATCCAAAAAGATATTTTAGACATCTTCCTCACTTCCCCAAGCAACAGTTTTCCTCTAAATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTTGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGATGAGGCGTTGTCCCATCCATATTTAGCACCTCTTCATGATATCAACGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTTGATTTCGAGCAACCAACGTACACCGAAGAAAACATCAAGGAACTCGTATGGAGGGAATCCTTGGCATTCAACCCCGATCCCGCTTTTTGA 1113 40.97 MENSSFYQNIRGEPTHGGQYIQYNVYGNLFEVSRKYTPPIRPVGRGAYGIVCAALNSETNEDVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALRDIIRPPQRENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRYFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGKDYVHQLKLITELIGSPDESSLGFLRSDNPKRYFRHLPHFPKQQFSSKFPTMSPAAIDLLEKMLVFDPTKRITVDEALSHPYLAPLHDINEEPVCPRPFSFDFEQPTYTEENIKELVWRESLAFNPDPAF 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29178118 29182729 - MELO3C021187.2.1 Cme11g02185 342848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02185 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Cme11g02185 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cme11g02185 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Cme11g02185 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Cme11g02185 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 14 369 - -
Cme11g02185 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524
Cme11g02185 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02185 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02185 370 CDD STKc_TEY_MAPK 30 366 - -
Cme11g02185 370 SMART serkin_6 37 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02185 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11-RELATED 14 369 - -
Cme11g02185 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01677 Cme-Chr7:22367188 Cme11g02185 Cme-Chr11:29178118 3.07E-145 dispersed
Cme11g02185 Cme-Chr11:29178118 Cme12g00284 Cme-Chr12:3472518 0 dispersed
Cme03g01929 Cme-Chr3:27348204 Cme11g02185 Cme-Chr11:29178118 1.19E-153 transposed
Cme08g00217 Cme-Chr8:1454229 Cme11g02185 Cme-Chr11:29178118 1.03E-56 transposed
Cme12g00271 Cme-Chr12:3136210 Cme11g02185 Cme-Chr11:29178118 0 transposed
Cme11g02185 Cme-Chr11:29178118 Cme09g01791 Cme-Chr9:22327506 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65279 PF00069 Pkinase 2.60E-71 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02185 K20600 - csv:101215189 755.362