Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02213 ATGGGTTCCCTCAACCCTATCCTCACTATCCTCTCTCTCTTCACCTTAACTCTCTTCCTTTCTCTCCTCTTTGCCTCCGCCGACGACGCCACCGTCATTCAGAAGCTCGCCGCCGCTGTTTCTCCCACCCCTTCTGGCTGGTCCTCCAACACCCCTTTCTGCAGCTGGAAAGAAATCCGCTGCGACTCCTCAAGCCGTGTCACCTCCATTAACTTAGATTCCAAATCCCTCTCCGGCGTTCTCCCTTCCGATCTTAACTCTCTGTCTCAGCTCACTTCTCTCTCTCTTCAACGCAACTCCTTCACCGGTCCTATCCCTTCTTTTGCTAATCTCTCTTTTCTCCAGACCCTTTATCTTCACGACAATAATTTCTCCTCTGTTTCTCCTGGTGCCTTCCAAGGCCTTACTAGTTTGCAGATTCTGAGTCTGACCCAGAATGTTAATCTTGCTCCTTGGTCCATTCCGACTGACTTGACTCAAGCTTCAAGTTTGGTTAGTTTATATGCTGCCAATGCCAACCTTGTTGGGTCTTTGCCGGATTTCTTCGATTCCTTCTCTAGTTTGCAGGAGCTTCGTCTTTCTTACAACAATCTTACTGGGGTCTTGCCTAAATCTCTTGGTGGATCTGGGATTAAGAGCTTGTGGTTGAACAATCAGCTAAATGGGTTGTCGGGTTCTATTGACTTGTTGTCGTCTATGACTCAACTGACTCAGGTTTGGCTTCAGAAGAATCAGTTTACTGGGCAGATTCCGGATTTTTCTAAGTGTGAAGGTTTGTTTGATCTTCAGCTTCGTGATAATCAGTTTACTGGGATTGTTCCTCCTTCGCTTATGTCTCTTTCTAGCTTGTTAAATGTTAGTTTGGATAACAATAAGCTTCAGGGGCCATTGCCTGTGTTTGATTCAAGAGTTCAGGCGAGTTTCAGCAGTGTTAATAGGTTCTGCAAGTCGACGCCGGGTCCGTGTGATGCTCAAGTTTCGGTGCTTCTTGCGGTTGCCGGAGCGTTTGGGTACCCGATTTCGCTGGCAGATGCGTGGGAAGGAAATAATGTTTGCCAGGATTGGAGCTTTGTGGTTTGTACTGAAGGTAAGGTTACTACTGTTAACTTTGCTAAGCAGCATTTGGTGGGAGTGATATCCCCTGCATTTGCGAATTTGACGAGTCTGAAGAATTTGTATTTGAATGACAATAATTTGGTTGGCGAGATACCGGAGAGTTTAACGACATTGACGCAGCTTCAGAATCTTGATGTTTCGAACAACAATTTGAGTGGACAGATACCTAAGTTTGCTCCAACAGTTCGCTTGAACACGAAGGGTAATCCTTTGATTGGGACTAGTTTGAGCCCTGGAAATGGAGGGAATGATGGCGGAGCTGGAGGTGGGAAGATTGGTTCCAACGGCACCACCATTGATGGGACAACTTCAGGATCTTCCAATGGATCCTCTGTTTCAGCTGGTGTGATTGCTGGTGTTGTTATTGCTGTCGTTGTTTTTGTTGCTGTTTTACTGTTTGTTGTCTTTAAATGTTATGTAAGCAATAGGCATAAGAAGTTTGGGAAAGTGAATAATCCTGAAAATGGGAAGGAGATTGTGAAGAGTGATGGAGGGAGCGGCTTGAATGGCTATGCTGGAGTTCCAAGTGAGCTTCAAAGCCAGAGTAGTGAGGATTTCAGCAATGACATTAATGTTTTCGAGGGCGGAAACGTGGCGATCTCGATACAAGTTTTGAAACAGGTGACAAACAATTTTAGTGAGGATAATGTGTTGGGAAGGGGTGGATTTGGAGTTGTTTACAAAGGAGAGTTACATGATGGTACCAAAATTGCTGTGAAAAGAATGGAATCTGGGCCAATGGGTACCAAAGGAATGAGTGAGTTTCAAGCTGAAATTGCTGTGCTTACCAAAGTTAGGCATAGGCATTTGGTTGCTCTTTTGGGTTATTGTATCAATGGCAATGAGAGGTTATTGGTGTATGAGTACATGCCTCAAGGGACATTGACTCAACATTTGTTTGATTGGCAAGAGAATGGTTATCCTCCTCTCACATGGAAGCAGCGAATTACAATTGCTTTAGATGTGGCAAGAGGAGTAGAATATCTTCATAGCTTAGCCCAACAAAGTTTCATTCATAGAGACTTGAAACCTTCTAATATACTTCTTGGTGATGACATGAGAGCTAAGGTGGCTGATTTTGGTTTGGTTCGAAATGCACCCGATGGAAAATACTCTGTAGAGACTCGATTAGCTGGAACATTTGGCTATCTTGCTCCTGAATATGCAGCAACGGGAAGGGTGACGACAAAAGTCGATGTATATGCATTTGGGGTAGTTTTGATGGAAATCATCACCGGTCGAAAAGCATTGGACGACACAATGCCAGACGAGCGATCTCATCTAGTCACATGGTTTCGTAGAGTCTTGATCATGAAAGAGAACATTCCAAAAGCGATCGATCAAACTCTCAACCCAGACGAGGAAACCATGGAGAGCATATTAAAGGTGGCAGAATTGGCAGGACACTGTACAGCTCGCGAGCCACATCAAAGACCCGACATGGGCCATGCTGTCAACATCCTCGGCCCTCTCGTCGAGCAATGGAAACCTTCAAACCAACACGAAGAAGAAACAGATGGGATCGATCTGCACATGAGCCTACCTCAAGCTCTTCAAAGATGGCAAGCAAATGAAGGAACATCCACAATGATGTTCAGTGACATGTCTTACTCTCAAACCCACACAAGCATTCCTTCAAAACCTTCAGGATTTGCTGATACATTTGACTCCATGGATTGCAGGTGA 2802 44.9 MGSLNPILTILSLFTLTLFLSLLFASADDATVIQKLAAAVSPTPSGWSSNTPFCSWKEIRCDSSSRVTSINLDSKSLSGVLPSDLNSLSQLTSLSLQRNSFTGPIPSFANLSFLQTLYLHDNNFSSVSPGAFQGLTSLQILSLTQNVNLAPWSIPTDLTQASSLVSLYAANANLVGSLPDFFDSFSSLQELRLSYNNLTGVLPKSLGGSGIKSLWLNNQLNGLSGSIDLLSSMTQLTQVWLQKNQFTGQIPDFSKCEGLFDLQLRDNQFTGIVPPSLMSLSSLLNVSLDNNKLQGPLPVFDSRVQASFSSVNRFCKSTPGPCDAQVSVLLAVAGAFGYPISLADAWEGNNVCQDWSFVVCTEGKVTTVNFAKQHLVGVISPAFANLTSLKNLYLNDNNLVGEIPESLTTLTQLQNLDVSNNNLSGQIPKFAPTVRLNTKGNPLIGTSLSPGNGGNDGGAGGGKIGSNGTTIDGTTSGSSNGSSVSAGVIAGVVIAVVVFVAVLLFVVFKCYVSNRHKKFGKVNNPENGKEIVKSDGGSGLNGYAGVPSELQSQSSEDFSNDINVFEGGNVAISIQVLKQVTNNFSEDNVLGRGGFGVVYKGELHDGTKIAVKRMESGPMGTKGMSEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLTQHLFDWQENGYPPLTWKQRITIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVRNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEIITGRKALDDTMPDERSHLVTWFRRVLIMKENIPKAIDQTLNPDEETMESILKVAELAGHCTAREPHQRPDMGHAVNILGPLVEQWKPSNQHEEETDGIDLHMSLPQALQRWQANEGTSTMMFSDMSYSQTHTSIPSKPSGFADTFDSMDCR 933
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29369857 29373316 - MELO3C021159.2.1 Cme11g02213 342876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02213 933 CDD STKc_IRAK 590 863 - -
Cme11g02213 933 MobiDBLite consensus disorder prediction 446 477 - -
Cme11g02213 933 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Cme11g02213 933 Pfam Protein tyrosine and serine/threonine kinase 587 858 IPR001245 GO:0004672|GO:0006468
Cme11g02213 933 ProSitePatterns Protein kinases ATP-binding region signature. 590 612 IPR017441 GO:0005524
Cme11g02213 933 ProSiteProfiles Protein kinase domain profile. 584 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02213 933 SUPERFAMILY L domain-like 61 433 - -
Cme11g02213 933 Pfam Leucine rich repeat 107 146 IPR001611 GO:0005515
Cme11g02213 933 Pfam Leucine rich repeat 367 423 IPR001611 GO:0005515
Cme11g02213 933 Gene3D Phosphorylase Kinase; domain 1 545 661 - -
Cme11g02213 933 Gene3D Transferase(Phosphotransferase) domain 1 662 885 - -
Cme11g02213 933 Gene3D Ribonuclease Inhibitor 28 320 IPR032675 -
Cme11g02213 933 PANTHER RECEPTOR PROTEIN KINASE TMK1-RELATED 14 933 - -
Cme11g02213 933 MobiDBLite consensus disorder prediction 911 933 - -
Cme11g02213 933 SMART LRR_typ_2 111 134 IPR003591 -
Cme11g02213 933 SMART LRR_typ_2 88 110 IPR003591 -
Cme11g02213 933 SMART LRR_typ_2 185 208 IPR003591 -
Cme11g02213 933 SMART LRR_typ_2 386 410 IPR003591 -
Cme11g02213 933 PANTHER OSJNBA0070M12.3 PROTEIN 14 933 - -
Cme11g02213 933 Gene3D Ribonuclease Inhibitor 323 448 IPR032675 -
Cme11g02213 933 SUPERFAMILY Protein kinase-like (PK-like) 567 860 IPR011009 -
Cme11g02213 933 SMART serkin_6 584 868 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme11g02213 933 Pfam Leucine rich repeat N-terminal domain 323 360 IPR013210 -
Cme11g02213 933 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02213 - - - csv:101213513 1645.56
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme09g01332 Cme-Chr9:18391767 Cme11g02213 Cme-Chr11:29369857 0 dispersed
Cme10g00554 Cme-Chr10:3544303 Cme11g02213 Cme-Chr11:29369857 3.02E-64 dispersed
Cme11g02213 Cme-Chr11:29369857 Cme06g00980 Cme-Chr6:6983400 9.69E-20 dispersed
Cme11g02213 Cme-Chr11:29369857 Cme04g00205 Cme-Chr4:1506131 3.27E-88 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1059 . Blo12g00158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0538 Cone15ag0562 Cone18ag0903 . . . . . . Blo07g00197 . . . . . Bma06g01485 . . . Cma08g00873 . . . . . Bhi12g02115 . . . . . Lcy13g0883 . . . . . . . Lsi09g01615 . . Cme11g02213
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004008 3 1 2 2 2 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 0 0 0 2 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65280 PF07714 PK_Tyr_Ser-Thr 9.60E-49 CL0016 Cme PK