Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02215 ATGAATAACACAACACCACCCAATCCCCGTCGTGTCCTGTTAATTACATATTCTGCTCAAGGGCACATTAATCCTACTCTCCAACTCGCCAAGCGCCTCATCCGCCACGGGGATCTCCATGTCACCTTCCTCACCTCTCTATCTGCCTACCGCCGCATGGGTCAAACCCCAACTCTCCCACATCTCTCATTTGCCTCCTTTTCCGATGGCTACGACGACGGTTTCAAACCTGGTGACGACATTGACCATTACGTGTCGGAGCTTGAGCGTTGTGGTTCTGATGCTTTGAAGAATATAATCCAGGAGAGTAGAAACCAAGGTCAACCCTTCACTTGTATTGTGTATTCCATACTCCTCCCTTGGGTGGCTACGGTGGCACGTTCCCTCGATGTTGCGTCGGTTCTTCTTTGGATTCAACCCGCGGTCGTTTTCGCGTTGTATTACTATTACTTCAACGGATATTACGACGAAATTCAAAGGATTATCTCTGGGGATGATCCTGGTTCTTCAATGAGTATTAAATTGCCTGGGCTTCCGTTGTTGAGTGCTCGTGATCTTCCATCATTTTTTGGTGGTTCAGATGTTTATGCTTTTGCACTCATAATATTTAGGAAGCAATTTGAATTACTAGAAGAAGAAGAGAGTAATCCAAATATTTTAATCAATACATTTGAAGAGCTGGAGAAGGATGCAGTGAAAGCAATTAAGAAATTTCATTTGATGCCTATCGGACCATTGATTCCATCTGTTTTTTTTGACGGAACTGACCCATCAGAAGCTTCTTCTGGCTGTGATCTATATCGATCTACGAGCAGTTATATCGACTGGTTGAACTCGAAACCTAAAGCATCTGTTGTCTACGTATCATCGGGAAGCATTACAAAATTATCAAATCAACAAAAAGAGGAGATGGCGAGAGGATTATTAAGTACAAAAAGACCATTTTTATGGGTTATCCGAGACACTGAAGCAGAAGAAGATTCATTAAGCTTTAAAGAGAAACTAGAAACTCAAGGGAAAATAGTCCCATGGTGTTCTCAACTTGAGGTTCTCTCAAGTCCAGCCACAGGCTGTTTTCTCACACATTGTGGTTGGAATTCTTGTTTGGAGAGTCTGGCTTGCGGCGTTCCAACCGTGGCGTTTCCACAATGGTCCGATCAAGCGACCAACAGTAAGATCATTCAGGACTTGTCAGAGACCGGGGTGAGGTTAGAGGCGGGGGAAGACGGCGTGGTTAAGGGAGAGGAGATAGAAAGGTGCTTGACGTTGGTAATGGGAGATTCAAAGAAAGGAGAGGACATAAGGAGGAATGCTTTGAAATGGAAGAAGTTGGCTAAGGAAGCTGCTAGTGAGGGTGGTTCATCATTTGCCAATTTCAAAGCTTTTGTGGATCAAGTATGTTCTTAG 1407 44.07 MNNTTPPNPRRVLLITYSAQGHINPTLQLAKRLIRHGDLHVTFLTSLSAYRRMGQTPTLPHLSFASFSDGYDDGFKPGDDIDHYVSELERCGSDALKNIIQESRNQGQPFTCIVYSILLPWVATVARSLDVASVLLWIQPAVVFALYYYYFNGYYDEIQRIISGDDPGSSMSIKLPGLPLLSARDLPSFFGGSDVYAFALIIFRKQFELLEEEESNPNILINTFEELEKDAVKAIKKFHLMPIGPLIPSVFFDGTDPSEASSGCDLYRSTSSYIDWLNSKPKASVVYVSSGSITKLSNQQKEEMARGLLSTKRPFLWVIRDTEAEEDSLSFKEKLETQGKIVPWCSQLEVLSSPATGCFLTHCGWNSCLESLACGVPTVAFPQWSDQATNSKIIQDLSETGVRLEAGEDGVVKGEEIERCLTLVMGDSKKGEDIRRNALKWKKLAKEAASEGGSSFANFKAFVDQVCS 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29388679 29390871 - MELO3C021156.2.1 Cme11g02215 342878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02215 468 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 10 465 - -
Cme11g02215 468 Gene3D Glycogen Phosphorylase B; 261 447 - -
Cme11g02215 468 ProSitePatterns UDP-glycosyltransferases signature. 344 387 IPR035595 -
Cme11g02215 468 Gene3D Glycogen Phosphorylase B; 15 458 - -
Cme11g02215 468 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 8 466 - -
Cme11g02215 468 CDD GT1_Gtf-like 11 458 IPR002213 GO:0008194
Cme11g02215 468 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 10 465 - -
Cme11g02215 468 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 275 405 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02215 - - - csv:101203309 797.734
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00859 Cme11g02215 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00859 Cme-Chr6:5877707 Cme11g02215 Cme-Chr11:29388679 5.20E-109 dispersed
Cme11g02215 Cme-Chr11:29388679 Cme11g02217 Cme-Chr11:29397648 2.91E-113 dispersed
Cme11g02208 Cme-Chr11:29333911 Cme11g02215 Cme-Chr11:29388679 2.71E-148 proximal
Cme11g02215 Cme-Chr11:29388679 Cme11g02216 Cme-Chr11:29392496 4.31E-139 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1057 . . . . . . . . Cmo08g00840 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00859 . . . . . . . . . . . Cma08g00870 . . . . . Bhi12g02118 . . . . . Lcy13g0890 . . . . . . . Lsi09g01617 . . Cme11g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002292 1 2 2 2 2 2 0 2 2 1 2 2 2 1 2 4 2 8 2 2 1 3 1 1 1 2 1 1 1 8 63