Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02217 ATGAGAAACCACCATTTCCTCATTGTATGTTTCCCTGTTCATGGCCATCTAAACCCTTCCCTTGAATTAGCTCATCGTCTCACAGAGTTGGGCCATCATGTCACCTTTGCCACCACCGTCAAAGGAAGCCACAAAATCACCACCATCGCCAACAACAACAAAGAAAAAACCACCACCTTGTTATCTTTCACTACTCTCTCTGATGGCTCTGATGAACAAAGAACCCCCAACAAATCCACTCGCAACACCACCCAATTCTTCGATAATCTCAAGCTTCATGGCTCTCGATCTCTCACGAATCTATTCATTTCAAACCAACAATCTCATAACCCTTTCACTTTTGTAATTTACTCCCTTTTGTTCCATTGGGTTGCTGATGTAGCCACTTCTTTTCACATCCCATCAGCTCTTCTTTTTGTTCAACCAGCTACCCTTTTAGTTTTGTATTACTATTACTTTCATGGCTATGGTGATACAATTCCTAACCAAAAATTACAAGGTTTGCCTTTGCTTTCTACTAATGACATGCCATCTTTCCTTTTCCCTTCTTGCCCTCATGCTTGTCTTCTCCCTTTGTTCAAACAACAAATTGAAGTACTCCTTGACCAAAAAAGTCAACCAAAAGTAGTACTAGTCAATACTTTTGATGCCCTTGAGAGCCGAGCGTTGGAATTAGCGATTGATGGGTTAGAGATCTTGGGAATTGGACCATTGATACCTAATTTTGTTTCCTATGGTAGTAATATTTATCGTGATGATTGTATTGAATGGTTGAACTCTAAGCCAAATTCTTCAGTAGTTTACGTTTCTTTCGGATCTATTTGTGTGTTGAGTAATAGACAAAAGGAGGAGATTTTGTATGCTTTGTTGGAAAGTGGATTTACATTTTTATGGGTAATGATCAATGGAGATCAAAAGGAAGGGAAAGATGAATGTTGTGATTTATTACTACAAGGGCAAGGGAAGATTGTGAGTTGGTGTAGACAAATTGAAGTGTTGAAACATCCTTCGTTAGGTTGTTTTATGAGTCATTGTGGTTGGAATTCAACATTAGAAAGCTTGAGTTTTGGGTTGCCAATGGTGGCTTTTCCTCAACAAGTAGATCAACTTACTAATGCTAAGCTTGTGGAAGATGTGTGGAAGGTGGGAGTAAGAGTGAAGGCTAACTTAGAAGGGATTATAGAGAAGGAAGAAATTAGGAAGTGTTTGGAGTTGATCATGGGTAGATCAAGAGATGATGAACAAAGGAGAGAGGGCATTGTGGAAAATGCCAAAAAGTGGAAAATTTTGGCTTCACAAGCTATTGGTGAAGATGGTACATCATCCTTCAATCTTAAATCTTTTGTTGCAAATATTGATAAAATTAGTGGGTGA 1374 38.79 MRNHHFLIVCFPVHGHLNPSLELAHRLTELGHHVTFATTVKGSHKITTIANNNKEKTTTLLSFTTLSDGSDEQRTPNKSTRNTTQFFDNLKLHGSRSLTNLFISNQQSHNPFTFVIYSLLFHWVADVATSFHIPSALLFVQPATLLVLYYYYFHGYGDTIPNQKLQGLPLLSTNDMPSFLFPSCPHACLLPLFKQQIEVLLDQKSQPKVVLVNTFDALESRALELAIDGLEILGIGPLIPNFVSYGSNIYRDDCIEWLNSKPNSSVVYVSFGSICVLSNRQKEEILYALLESGFTFLWVMINGDQKEGKDECCDLLLQGQGKIVSWCRQIEVLKHPSLGCFMSHCGWNSTLESLSFGLPMVAFPQQVDQLTNAKLVEDVWKVGVRVKANLEGIIEKEEIRKCLELIMGRSRDDEQRREGIVENAKKWKILASQAIGEDGTSSFNLKSFVANIDKISG 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29397648 29399077 + MELO3C021154.2.1 Cme11g02217 342880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02217 457 CDD GT1_Gtf-like 5 444 IPR002213 GO:0008194
Cme11g02217 457 Gene3D Glycogen Phosphorylase B; 9 445 - -
Cme11g02217 457 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 451 - -
Cme11g02217 457 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 255 389 IPR002213 GO:0008194
Cme11g02217 457 ProSitePatterns UDP-glycosyltransferases signature. 326 369 IPR035595 -
Cme11g02217 457 PANTHER UDP-GLYCOSYLTRANSFERASE 75D1 4 451 - -
Cme11g02217 457 Gene3D Glycogen Phosphorylase B; 244 433 - -
Cme11g02217 457 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 4 451 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02217 - - - csv:101213995 766.533
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02215 Cme-Chr11:29388679 Cme11g02217 Cme-Chr11:29397648 2.91E-113 dispersed
Cme11g02217 Cme-Chr11:29397648 Cme01g00088 Cme-Chr1:594978 9.34E-86 dispersed
Cme11g02216 Cme-Chr11:29392496 Cme11g02217 Cme-Chr11:29397648 3.14E-171 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1044 . . . . . Bpe14g01052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g02120 . . . . . Lcy13g0893 . . . . . . . . . . Cme11g02217
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007278 0 2 0 0 0 1 0 1 1 2 1 1 2 2 2 2 1 0 1 1 2 1 1 2 0 2 2 1 2 0 33