Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02227 ATGTTGGATTATGAATGGGGATCAACAAACCCGCCGCCGATCATCCTCTCTGGCGAAGAATCCGAACCTGTTTTCAACTCCGACCCATCTCACTCTCACAACTTCCCCACTTTCATAGACCTCCATCATCACAACACATTCTTTACTCCACCGCCGCCACCGCCACCACCGCCGCCGTCCACGGCGGCGTTCAGCTCTCACTTAGGGGGATTCTACGACCACCCACAGAGCTACACTATGGGTACTTCTTCATATCATCATTATAATAGTGTGACTGGGGGTGGAGGGGAGTTTATGTTGGTGCCGAAGAGTGAGGATGTTTGTGGGAGTATGGCGGCGCCGGTGGAATTTGCGGCGAGGATTGGGTTGAATTTGGGGGGAAGGACGTATTTCTCGTCGGAGGAAGAAGAGTTTGTGAACCGGCTGTACAGGAAGACGAGAAGCGGCAGCGAAATGGGTGGTTCGGGGAATTGGGCGGTCCGGTGTCAAGCGGAGGGGTGTAATGCGGATCTGAGTCAAGCGAAGCATTACCACCGACGACATAAGGTTTGTGAGTTTCATTCTAAAGCTTCCACTGTCATCACCGCCGGGTTGACTCAGAGGTTCTGTCAACAGTGCAGCAGGTTTCATGTAGTAGGGGAGTTTGATAATGGAAAACGGAGTTGCCGGAAAAGATTGGCAGATCACAACCGTCGACGGAGAAAGACCCAACAATCTCATCATCAAGGAACCCCTAACTCATCGCAACTGCTCCAAACTACCCCTTCTTCTTCAACTCATTCTGCTGCCACCAGATCGACAATGGAATCAACAGGACAATCGGCATGGTCCGTAACTGTGGCAGTGTCTCCAACAAGAATGTCATTAGACTGTCTTAACCAACGACCATTTTAA 894 51.01 MLDYEWGSTNPPPIILSGEESEPVFNSDPSHSHNFPTFIDLHHHNTFFTPPPPPPPPPPSTAAFSSHLGGFYDHPQSYTMGTSSYHHYNSVTGGGGEFMLVPKSEDVCGSMAAPVEFAARIGLNLGGRTYFSSEEEEFVNRLYRKTRSGSEMGGSGNWAVRCQAEGCNADLSQAKHYHRRHKVCEFHSKASTVITAGLTQRFCQQCSRFHVVGEFDNGKRSCRKRLADHNRRRRKTQQSHHQGTPNSSQLLQTTPSSSTHSAATRSTMESTGQSAWSVTVAVSPTRMSLDCLNQRPF 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29499556 29502640 + MELO3C021144.2.1 Cme11g02227 342890

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02227 297 Pfam SBP domain 162 235 IPR004333 GO:0003677
Cme11g02227 297 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Cme11g02227 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 113 294 - -
Cme11g02227 297 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
Cme11g02227 297 MobiDBLite consensus disorder prediction 240 275 - -
Cme11g02227 297 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 113 294 IPR044817 GO:0003677
Cme11g02227 297 MobiDBLite consensus disorder prediction 228 275 - -
Cme11g02227 297 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02227 - - - csv:101204773 545.428
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme06g00865 Cme11g02227 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00585 Cme-Chr7:5040478 Cme11g02227 Cme-Chr11:29499556 9.89E-35 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01579 Cme-Chr12:23147562 1.54E-33 dispersed
Cme11g02227 Cme-Chr11:29499556 Cme12g01922 Cme-Chr12:25258035 1.63E-34 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g983 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme11g02227
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009074 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42247 PF03110 SBP 1.90E-30 No_clan Cme TF