Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02263 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAGGAGAGACAAACGTCGATGGATTTTTAGAAAACCAACTAATCAGCAGCCGGAGCCACTCGCTGCCCACCAGCCGCCGTCTAAGCCGGCACCGGCTCTACCCATTGATTCTGTAGCTTTAGAAGACCAGAAACATGCGCTTGCAGTGGCTGAAGCTGCCATGGTTGCTGCTAGAGCGGCTGCACAAGCTGTCCACCTTACCCGACCTGCTCGGCCTGGGTTGGATCGACATAGTCTCGCCGCCATTGTGATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTGCGGGCATTGAAGGGGTTAGTGAAGTTGCAAGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACAACACTGCAATGTATGAAAGCATTAGTGAGAGTACAGGAAAAAGTGCTGGATCACCGGATGCGACTCTCCCTCGAGGGCAGCCGACGGTCGACCTTTAGTGACACCAACAGCGTCTACGAATCTCGCTATCCTCAAGACGTGTCTGAAAGGAAGACTATTAAGTGTGTGTCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTTAAGGCAATGTTACAACTTAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAGCAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAACAGAGCTTGAAGAAGGACAAAAATGGTTAGACCAATGGATGGCAAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCACAGATCACAGACCACAGCCCCTTAAAACCCTTGAAATCGACACCTCTCGACCCTACTCCTACTTATCTCCCAACAATCTCCACACAACAAATTATCAACCTCAATCCCAAAGATCGAACTCGCTTTCATCCTCCTCCCCACTCCACAGAGCCCATCAACACCAATTCTCCATCACCCCATCCCCGTCAAAATCACGACCGGTCCCTCAAGTTCGGTCGGCGAGTCCTCGCTACAGCAGAGAAGATAGAAATCAAATCAACCATCACCAAATTACATCCCAAACACCAAGCTTGAGGTCAAAATATCAATATCAAAAAGGGGGTAGTGGTGGAGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTGCGGTCACAAAGTGCACCAAGGCAAAGGCCAGCAACGCCCGAGAGGGAACGAGTTGGTGGGACTGCAAGGAAACGGCTATCGTTTCCAGTACCGCCGGATCCTTATGGTAGAATAGCAGGGTGTTCTGTTTATGGGAATAGCATGAAGAGTCCAAGTTTTAAGAGTGCTTGTGGAAGGTTTGGTGGGTTAGAGGAACAGTCAAATTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCTCCATCTTCAACCACTGATCTTAGAAGGTGGCTGAGATGA 1539 48.73 MGKKGGSSWLTAVKRAFRSPTKDDDEKRRDKRRWIFRKPTNQQPEPLAAHQPPSKPAPALPIDSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHSLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYPQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQLRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQTELEEGQKWLDQWMAKKPWESRARASTDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQPQSQRSNSLSSSSPLHRAHQHQFSITPSPSKSRPVPQVRSASPRYSREDRNQINHHQITSQTPSLRSKYQYQKGGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGGTARKRLSFPVPPDPYGRIAGCSVYGNSMKSPSFKSACGRFGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29739482 29743091 - MELO3C022253.2.1 Cme11g02263 342926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02263 512 PANTHER IQ-DOMAIN 5-RELATED 1 512 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 377 427 - -
Cme11g02263 512 Pfam Protein of unknown function (DUF4005) 364 458 IPR025064 -
Cme11g02263 512 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 512 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 486 512 - -
Cme11g02263 512 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Cme11g02263 512 Pfam IQ calmodulin-binding motif 131 147 IPR000048 GO:0005515
Cme11g02263 512 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Cme11g02263 512 Gene3D - 101 157 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 283 449 - -
Cme11g02263 512 SMART iq_5 103 125 IPR000048 GO:0005515
Cme11g02263 512 SMART iq_5 126 147 IPR000048 GO:0005515
Cme11g02263 512 MobiDBLite consensus disorder prediction 283 299 - -
Cme11g02263 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 149 IPR027417 -
Cme11g02263 512 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Cme11g02263 512 MobiDBLite consensus disorder prediction 1 59 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 17 38 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 305 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00023 Cme-Chr6:155118 Cme11g02263 Cme-Chr11:29739482 2.67E-121 dispersed
Cme06g00579 Cme-Chr6:3718771 Cme11g02263 Cme-Chr11:29739482 4.67E-20 dispersed
Cme09g01169 Cme-Chr9:16427891 Cme11g02263 Cme-Chr11:29739482 1.01E-33 dispersed
Cme11g02263 Cme-Chr11:29739482 Cme11g02434 Cme-Chr11:31128618 9.61E-25 dispersed
Cme12g01757 Cme-Chr12:24242848 Cme11g02263 Cme-Chr11:29739482 9.84E-18 dispersed
Cme11g02263 Cme-Chr11:29739482 Cme10g00057 Cme-Chr10:431699 2.95E-32 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02263 - - csv:101207978 944.11