Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02263 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCTGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGACGACGAAAAGAGGAGAGACAAACGTCGATGGATTTTTAGAAAACCAACTAATCAGCAGCCGGAGCCACTCGCTGCCCACCAGCCGCCGTCTAAGCCGGCACCGGCTCTACCCATTGATTCTGTAGCTTTAGAAGACCAGAAACATGCGCTTGCAGTGGCTGAAGCTGCCATGGTTGCTGCTAGAGCGGCTGCACAAGCTGTCCACCTTACCCGACCTGCTCGGCCTGGGTTGGATCGACATAGTCTCGCCGCCATTGTGATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTGCGGGCATTGAAGGGGTTAGTGAAGTTGCAAGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACAACACTGCAATGTATGAAAGCATTAGTGAGAGTACAGGAAAAAGTGCTGGATCACCGGATGCGACTCTCCCTCGAGGGCAGCCGACGGTCGACCTTTAGTGACACCAACAGCGTCTACGAATCTCGCTATCCTCAAGACGTGTCTGAAAGGAAGACTATTAAGTGTGTGTCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTTAAGGCAATGTTACAACTTAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCATTCCTTTTCTCAGCAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAACAGAGCTTGAAGAAGGACAAAAATGGTTAGACCAATGGATGGCAAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCACAGATCACAGACCACAGCCCCTTAAAACCCTTGAAATCGACACCTCTCGACCCTACTCCTACTTATCTCCCAACAATCTCCACACAACAAATTATCAACCTCAATCCCAAAGATCGAACTCGCTTTCATCCTCCTCCCCACTCCACAGAGCCCATCAACACCAATTCTCCATCACCCCATCCCCGTCAAAATCACGACCGGTCCCTCAAGTTCGGTCGGCGAGTCCTCGCTACAGCAGAGAAGATAGAAATCAAATCAACCATCACCAAATTACATCCCAAACACCAAGCTTGAGGTCAAAATATCAATATCAAAAAGGGGGTAGTGGTGGAGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTGCGGTCACAAAGTGCACCAAGGCAAAGGCCAGCAACGCCCGAGAGGGAACGAGTTGGTGGGACTGCAAGGAAACGGCTATCGTTTCCAGTACCGCCGGATCCTTATGGTAGAATAGCAGGGTGTTCTGTTTATGGGAATAGCATGAAGAGTCCAAGTTTTAAGAGTGCTTGTGGAAGGTTTGGTGGGTTAGAGGAACAGTCAAATTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCTCCATCTTCAACCACTGATCTTAGAAGGTGGCTGAGATGA 1539 48.73 MGKKGGSSWLTAVKRAFRSPTKDDDEKRRDKRRWIFRKPTNQQPEPLAAHQPPSKPAPALPIDSVALEDQKHALAVAEAAMVAARAAAQAVHLTRPARPGLDRHSLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYPQDVSERKTIKCVSREGSSITEDWDERAHTVEEVKAMLQLRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQTELEEGQKWLDQWMAKKPWESRARASTDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQPQSQRSNSLSSSSPLHRAHQHQFSITPSPSKSRPVPQVRSASPRYSREDRNQINHHQITSQTPSLRSKYQYQKGGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGGTARKRLSFPVPPDPYGRIAGCSVYGNSMKSPSFKSACGRFGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 29739482 29743091 - MELO3C022253.2.1 Cme11g02263 342926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02263 512 PANTHER IQ-DOMAIN 5-RELATED 1 512 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 377 427 - -
Cme11g02263 512 Pfam Protein of unknown function (DUF4005) 364 458 IPR025064 -
Cme11g02263 512 PANTHER PROTEIN IQ-DOMAIN 1-LIKE ISOFORM X1 1 512 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 486 512 - -
Cme11g02263 512 ProSiteProfiles IQ motif profile. 128 155 IPR000048 GO:0005515
Cme11g02263 512 Pfam IQ calmodulin-binding motif 131 147 IPR000048 GO:0005515
Cme11g02263 512 Pfam IQ calmodulin-binding motif 107 125 IPR000048 GO:0005515
Cme11g02263 512 Gene3D - 101 157 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 283 449 - -
Cme11g02263 512 SMART iq_5 103 125 IPR000048 GO:0005515
Cme11g02263 512 SMART iq_5 126 147 IPR000048 GO:0005515
Cme11g02263 512 MobiDBLite consensus disorder prediction 283 299 - -
Cme11g02263 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 149 IPR027417 -
Cme11g02263 512 ProSiteProfiles IQ motif profile. 104 132 IPR000048 GO:0005515
Cme11g02263 512 MobiDBLite consensus disorder prediction 1 59 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 17 38 - -
Cme11g02263 512 MobiDBLite consensus disorder prediction 305 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02263 - - - csv:101207978 944.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00023 Cme-Chr6:155118 Cme11g02263 Cme-Chr11:29739482 2.67E-121 dispersed
Cme06g00579 Cme-Chr6:3718771 Cme11g02263 Cme-Chr11:29739482 4.67E-20 dispersed
Cme09g01169 Cme-Chr9:16427891 Cme11g02263 Cme-Chr11:29739482 1.01E-33 dispersed
Cme11g02263 Cme-Chr11:29739482 Cme11g02434 Cme-Chr11:31128618 9.61E-25 dispersed
Cme12g01757 Cme-Chr12:24242848 Cme11g02263 Cme-Chr11:29739482 9.84E-18 dispersed
Cme11g02263 Cme-Chr11:29739482 Cme10g00057 Cme-Chr10:431699 2.95E-32 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g00610 . 1 470 IQD Protein Family AT3G52290 54.2 1.6e-101 366.7
Cme02g00846 . 1 406 IQD Protein Family AT3G22190 56.7 1.3e-95 347.1
Cme07g00215 . 1 438 IQD Protein Family AT2G26180 60.5 1.0e-116 417.2
Cme08g00247 . 59 332 IQD Protein Family AT2G33990 52.5 3.2e-63 238.8
Cme07g01328 . 40 223 IQD Protein Family AT2G33990 53.5 5.8e-49 191.4
Cme08g00247 . 59 290 IQD Protein Family AT3G15050 50.4 4.8e-56 214.9
Cme07g01328 . 43 216 IQD Protein Family AT3G15050 61.6 1.0e-53 207.2
Cme11g02263 . 1 512 IQD Protein Family AT4G00820 50.4 5.9e-109 391.7
Cme06g00023 . 3 359 IQD Protein Family AT4G00820 52.8 3.1e-81 299.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54