Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02307 ATGAATTTTCACAAACAAGACATGGAATTTCTTACCAAAAGCACAAGAGAAGATCAAGATCAAGATCAGGAAGAAGATGAAGAAGAAGATGAAGATCAAGAACAAGATCAAGATCTTGTTGCATGCAATTTCTTCCCAAATTCTCACACCCAATTAACCAACCAACAAGACCAAGATCAAGATCAGGAAAGTGGGAATTTTGAGTGTCAAAATGAGGATCATCAACCAATTCTCATGGATTTATCCTTAAGAATGGAAAGCAATGGTTTTGTTGATGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCGAGTGATGTTGGAAAATTAAACCGTTTAGTTATTCCAAAACAACATGCTGAGAAGTACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTAATCTTAAACTTTGAAGACCGTCATGGAAAGCCTTGGCGTTTTCGTTACTCTTATTGGAATAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGTCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGATATCGTTTCTTTCCACCGTGCTATCCCGAGTCATTCCGTCAACGACCGACTTTTTATCGACTGGCGTCGTCGTCGCTCCGACGCTCCTACTCCTCATCACCATCACCGCCATTTCTCTAATCCTTTTCTCCTCCGCTGGGGCACTACTGCTCGTCACTTGCCACAACCTCCGCCTCTGCCACGACGAACAACTCACCACCAACACCATCTTTACCCTAATTACGGGTTTGAAATCCCTAATTTTGGGATGTCTAATATTAATAATTCTTCCATGTATTATTTTCGACCATCGTCTTCGTCTTCTTCTCTTTATAGGATGGGAAATGGGGATGAGCTTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCTGGGTCCGGTGCCGCAAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGATGTGTCAAACGGTGGCGTTCCGAAAAGAGGGAAAGAACCCTTGTCGTTGAATTGGGATTTACTTTAA 1092 42.49 MNFHKQDMEFLTKSTREDQDQDQEEDEEEDEDQEQDQDLVACNFFPNSHTQLTNQQDQDQDQESGNFECQNEDHQPILMDLSLRMESNGFVDVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRAIPSHSVNDRLFIDWRRRRSDAPTPHHHHRHFSNPFLLRWGTTARHLPQPPPLPRRTTHHQHHLYPNYGFEIPNFGMSNINNSSMYYFRPSSSSSSLYRMGNGDELVVNNQGCSSMGIINKPGSGAAKRLRLFGVNMECASPDGGGGGGGGGGEDVSNGGVPKRGKEPLSLNWDLL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30130044 30131299 - MELO3C022298.2.1 Cme11g02307 342970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02307 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 27 327 - -
Cme11g02307 363 Gene3D - 93 218 IPR015300 -
Cme11g02307 363 SUPERFAMILY DNA-binding pseudobarrel domain 97 188 IPR015300 -
Cme11g02307 363 ProSiteProfiles B3 DNA-binding domain profile. 100 206 IPR003340 GO:0003677
Cme11g02307 363 MobiDBLite consensus disorder prediction 49 68 - -
Cme11g02307 363 CDD B3_DNA 98 187 IPR003340 GO:0003677
Cme11g02307 363 MobiDBLite consensus disorder prediction 330 363 - -
Cme11g02307 363 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 27 327 IPR044800 GO:0003700
Cme11g02307 363 MobiDBLite consensus disorder prediction 1 19 - -
Cme11g02307 363 MobiDBLite consensus disorder prediction 20 37 - -
Cme11g02307 363 SMART B3_2 100 206 IPR003340 GO:0003677
Cme11g02307 363 Pfam B3 DNA binding domain 100 205 IPR003340 GO:0003677
Cme11g02307 363 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02367 Cme-Chr4:30473183 Cme11g02307 Cme-Chr11:30130044 2.74E-47 dispersed
Cme07g01632 Cme-Chr7:22077795 Cme11g02307 Cme-Chr11:30130044 7.21E-63 dispersed
Cme08g00326 Cme-Chr8:2073996 Cme11g02307 Cme-Chr11:30130044 5.43E-15 dispersed
Cme10g00289 Cme-Chr10:1878784 Cme11g02307 Cme-Chr11:30130044 8.48E-47 dispersed
Cme11g02307 Cme-Chr11:30130044 Cme11g01803 Cme-Chr11:26202658 7.99E-13 dispersed
Cme11g02307 Cme-Chr11:30130044 Cme09g01901 Cme-Chr9:23146679 5.51E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42255 PF02362 B3 4.70E-28 CL0405 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02307 - - csv:101221141 638.647