Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme11g02319 ATGAGCTCTCAAGCTACAGAGAAGAGAAAAGAAGCCTTGGGAAGTATGTGTGATGAGAGAGCTAGGATGCTTCAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCAATGTCCATTCTCATCTCTACCTTTCATCATGGCAAGAACCCATCTGCTATAGATCAGAGGACCTTTGCGAGATACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACTAGTGGTGTGGCGTATGCAGTAAGGGTGCTTCATTCTGACAGAGAACATTTTGAGAAGCAACAAGGCTGGACGATTAAAAGGATGGACAAAATCGAACAAAGTCCAGTTCATGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTTGCACAGGATACAATTTCTCATGTCGTTTCTCTTGATATGCTGTCTGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGAGCATCGGGAAAGGGAGTCTTAACTGCTCCATTCAAGTTAATCAAAACAAATCGTCTTGGGGTCATACTTACATTTGCGGTCTATAAAAGAGATCTTCCCTCAAATGCCACCCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCACTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACTATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCTGAAGATGGGTTGCAGCATGTTAGTCCCCTGAACTTTGGGGATCCAGATAGGAAACATGAGATGCGATGCAGATTCAAACAAAAACAACCTTGGCCTTGGTTGGCAATGACAACTTCAATTGGCATACTCATTATTGCCTTGCTTTTGGGGTATATATTCCATGCAACCTTGAACCGGATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACTCCTATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGACTTAGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAAGTTTTGGATCAGGCAAAAATCGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTCCGAGCAGTTTTGGATGATATTTTATCACTCTTTTCCGGGAAATCGCAAGAAAAAGGATTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCTGAGACGCTTGTTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCGATTAAGTTCACAGAAAAAGGACACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCGATTGATCTTGAGATTGAGTCGTCAACAAATAGCACCTTGAGTGGTTATCCTGTTGCGAATAGACGTCTCAGCTGGGCAGGGTTTCGAACGTTCAGTCAAGAGGGATCGACTGCTTGTCATTTCATGACATCTCCACCTGACCTTATTAACCTCATGGTATCCGTGGAAGATACAGGTGTCGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACGGGTATTGGGCTGAGTATTAGTAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGGTTGGCTCTACCTTCACATTCACTGCCGTTTTCACAAACGGCTCGACAAGTGAGTATAACAACACACAACAAATTAAGAACACTTCCATCAGTGCAACCTCAGAATTTAAGGGTATGAGAGCCTTAGTTGTGGACCATCAACCCATACGGGCCAAAGTATCGAGATATCACATCCAACGACTTGCAATAAATGTTGAAGTCTTATCTGACTTGAATCAATGTCTATCTACCACGACTATTAGTGGTTCGACTGTCAATATGATTTTTGTTGAGCAGAAAATTTGGGATCAGGGTATGAGCACATCGGAACATTTTATCAAAAACTTGAGAAATTCTTATGCAGTTCCTCCCAAACTATTTCTCCTTACTAGCTCCATTAGTTCTTCAAAAGCTAGCACTATGATCTCTGATGTATTCACTCCCACTGTCATCTTAAAGCCATTGAGGGCAGGCATGCTTGCTGCCTCTCTACACCGAGTCATGAGTGTGGGGATCAAGGGTAACCCTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGCAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATTGTCGCTGCTGGTGCTCTACAGCGATATGGAGCTGATGTGGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCTTGTTTCATGGATATTCAGATGCCAGAAATGGATGGGTACGTGATAAATATACATTCTTTTTCTCCTCCTTTTTGA 2574 42.39 MSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSDREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAVLDDILSLFSGKSQEKGLELAVYISDSVPETLVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPVANRRLSWAGFRTFSQEGSTACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKVGSTFTFTAVFTNGSTSEYNNTQQIKNTSISATSEFKGMRALVVDHQPIRAKVSRYHIQRLAINVEVLSDLNQCLSTTTISGSTVNMIFVEQKIWDQGMSTSEHFIKNLRNSYAVPPKLFLLTSSISSSKASTMISDVFTPTVILKPLRAGMLAASLHRVMSVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGYVINIHSFSPPF 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 30244922 30250747 + MELO3C022310.2.1 Cme11g02319 342982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme11g02319 857 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 391 608 IPR036890 -
Cme11g02319 857 SUPERFAMILY CheY-like 785 846 IPR011006 -
Cme11g02319 857 Gene3D - 306 400 - -
Cme11g02319 857 Gene3D - 779 848 - -
Cme11g02319 857 Pfam CHASE domain 53 249 IPR006189 -
Cme11g02319 857 ProSiteProfiles Response regulatory domain profile. 787 857 IPR001789 GO:0000160
Cme11g02319 857 SUPERFAMILY CheY-like 635 761 IPR011006 -
Cme11g02319 857 CDD HATPase_EvgS-ArcB-TorS-like 454 611 - -
Cme11g02319 857 SMART CHASE_2 50 251 IPR006189 -
Cme11g02319 857 ProSiteProfiles CHASE domain profile. 50 276 IPR006189 -
Cme11g02319 857 PANTHER HISTIDINE KINASE 3 1 846 - -
Cme11g02319 857 ProSiteProfiles Histidine kinase domain profile. 344 613 IPR005467 -
Cme11g02319 857 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 323 403 IPR036097 GO:0000155|GO:0007165
Cme11g02319 857 Pfam His Kinase A (phospho-acceptor) domain 337 402 IPR003661 GO:0000155|GO:0007165
Cme11g02319 857 Pfam Response regulator receiver domain 788 846 IPR001789 GO:0000160
Cme11g02319 857 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 449 611 IPR003594 -
Cme11g02319 857 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 846 - -
Cme11g02319 857 SMART HisKA_10 337 402 IPR003661 GO:0000155|GO:0007165
Cme11g02319 857 CDD REC_hyHK_CKI1_RcsC-like 788 846 - -
Cme11g02319 857 SMART HKATPase_4 449 613 IPR003594 -
Cme11g02319 857 Gene3D - 401 614 IPR036890 -
Cme11g02319 857 CDD HisKA 337 398 IPR003661 GO:0000155|GO:0007165
Cme11g02319 857 PRINTS Bacterial sensor protein C-terminal signature 538 552 IPR004358 GO:0016310|GO:0016772
Cme11g02319 857 PRINTS Bacterial sensor protein C-terminal signature 573 591 IPR004358 GO:0016310|GO:0016772
Cme11g02319 857 PRINTS Bacterial sensor protein C-terminal signature 556 566 IPR004358 GO:0016310|GO:0016772
Cme11g02319 857 PRINTS Bacterial sensor protein C-terminal signature 597 610 IPR004358 GO:0016310|GO:0016772
Cme11g02319 857 Gene3D CHASE domain 54 283 IPR042240 -
Cme11g02319 857 Gene3D - 1 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g00934 Cme-Chr11:13012937 Cme11g02319 Cme-Chr11:30244922 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42256 PF03924 CHASE 1.40E-37 CL0165 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme11g02319 K14489 - csv:101216313 1607.04